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Entry information : TvLiP12 (LiP12)
Entry ID 9593
Creation 2011-10-05 (Christophe Dunand)
Last sequence changes 2012-03-28 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-10-05 (Christophe Dunand)
Peroxidase information: TvLiP12 (LiP12)
Name (synonym) TvLiP12 (LiP12)
Class Lignin peroxidase    [Orthogroup: LiP002]
Taxonomy Eukaryota Fungi Basidiomycota Agaricomycetes Coriolaceae Trametes
Organism Trametes versicolor (Coriolus versicolor )    [TaxId: 5325 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value TvLiP12
start..stop		 S start..stop
TvLiP12_PRL572 754 0 1..372 1..372
TvLiP08 717 0 1..364 1..364
TvLiP04 627 0 1..364 1..364
TvLiP06 625 0 1..359 1..359
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '9593' 'join(2756035..2756095,2756169..2756376,2756434..2756568,2756622..2757168,2757234..2757308,2757365..2757429,2757486..2757513)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 2756035..2756095 59 N° 2 2756169..2756376 206 N° 3 2756434..2756568 133 N° 4 2756622..2757168 545
N° 5 2757234..2757308 73 N° 6 2757365..2757429 63 N° 7 2757486..2757513 26  
join(2756035..2756095,2756169..2756376,2756434..2756568,2756622..2757168,2757234 ..2757308,2757365..2757429,2757486..2757513)


exon

Literature and cross-references TvLiP12 (LiP12)
DNA ref. JGI genome:   scaffold_2 (2756035..2757513)
Protein sequence: TvLiP12 (LiP12)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   372 (351)
PWM (Da):   %s   39472.47 (37367.3)  
PI (pH):   %s   4.28 (4.24) Peptide Signal:   %s   cut: 22 range:22-372
Sequence
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAFKSLLSFVSVIGALQGANAALTRRVACPDGVNTATNAACCQLF
AVREDLQQNLFHGGLCTAEAHESLRLTFHDAIAISPALEAQGIFGGGGADGSIAIFPEIETNFHPNIGLDEIIELQKPFIARHNISVADFIQFAGAIGASNCAGAPQLAAFVGRKDATQPAPDGLVPEPFHTPDQIFDRLADAS
QGEFDPILTVWLLTAHTVAAANDVDPTKSGLPFDSTPELWDTQFFLETQLRGTSFPGSGGNQGEVESPLAGEMRLQSDHTIARDSRTACEWQSFVDNQPKAQQMFQFVFHDLSIFGQDIN
TLVDCTEVPIPADPQGHTHFPAGLSNADIEQACAETPFPTFPTDPGPKTAVAPVPKPPAARK

Retrieve as FASTA  
Remarks Complete sequence from genomic (6 introns).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTTTCAAGTCTCTTCTTTCTTTCGTCTCGGTCATTGGAGCGCTCCAGGGCGCGAACGCGGTGCGTAGGAGGTGGCGGGTCTCCGCCGACAGTGCGCCTTTTTGCAGCGTGCTGACA
CACATTAATCATCTAGCCGCGTTGACCCGCCGCGTCGCTTGCCCCGACGGCGTGAACACCGCTACCAACGCGGCGTGCTGCCAGCTCTTCGCCGTCCGCGAGGATCTCCAGCAGAACTTG
TTCCACGGCGGTCTCTGCACGGCTGAGGCGCACGAGTCTCTCCGCCTGACGTTCCACGACGCCATCGCCATCTCCCCCGCTCTCGAGGCCCAGGGCATCTTCGGGGGTACGCCGAATGAA
TTTCTGCCCCTGGCTCAATTTATTAACAGGATCTGCTATTTAGTGGCGGTGGTGCCGACGGCTCCATCGCGATCTTCCCCGAGATCGAGACCAACTTCCACCCCAACATCGGTCTCGACG
AGATCATCGAGCTCCAGAAGCCGTTCATCGCCCGTCACAACATCTCCGTCGCTGACTTTTGTGAGTACCGGAAGCGAAGCGACGATCGACCTTGTGCTGATTTGTCGGTGCAGCATCCAA
TTCGCCGGTGCTATTGGTGCCTCGAACTGCGCGGGTGCCCCCCAGCTCGCCGCCTTCGTTGGCCGCAAGGACGCCACCCAGCCCGCCCCCGACGGCCTCGTCCCCGAGCCGTTCCACACC
CCCGACCAGATCTTCGACCGTCTCGCCGACGCGTCCCAGGGCGAGTTCGACCCCATCCTCACGGTCTGGCTCCTGACCGCGCACACCGTTGCTGCCGCCAACGACGTCGACCCGACCAAG
TCCGGCCTGCCGTTCGACTCCACCCCCGAGCTCTGGGACACGCAGTTCTTCCTTGAGACCCAGCTCCGCGGCACGAGCTTCCCCGGCTCTGGCGGCAACCAGGGCGAGGTCGAGTCTCCC
CTTGCGGGCGAGATGCGTCTCCAGTCCGACCACACCATCGCTCGCGACTCCCGTACGGCGTGCGAGTGGCAGTCGTTCGTCGACAACCAGCCCAAGGCTCAGCAGATGTTCCAGTTCGTG
TTCCACGACCTCTCCATCTTCGGCCAGGACATCAACACGCTCGTCGACTGCACGGAAGTCTCGTACGTCGCACCATTCTTTCGCATTCTTGGCCCCCTGTAACAGCCACTAACTGCCACA
TGTATAGGTCCCCATCCCGGCTGACCCTCAGGGCCACACGCACTTCCCCGCTGGCCTGAGCAACGCCGACATCGAGCAGGCTCTGTGAGCACAATCTAGTTCCTCGCCGACTACACTTCA
CTGACCCATTCGCCCTATAGTGCGCCGAGACACCCTTCCCAACCTTCCCCACCGACCCCGGACCCAAGACCGCCGTTGCCCCCGTGTGTAAGTTTCACAACCGATATCACTTGTCTCCAC
GATTTAACGAGCCCTTCCACTAGCCCCAAACCCCCTGCCGCCCGGAAGTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTTTCAAGTCTCTTCTTTCTTTCGTCTCGGTCATTGGAGCGCTCCAGGGCGCGAACGCCGCGTTGACCCGCCGCGTCGCTTGCCCCGACGGCGTGAACACCGCTACCAACGCGGCG
TGCTGCCAGCTCTTCGCCGTCCGCGAGGATCTCCAGCAGAACTTGTTCCACGGCGGTCTCTGCACGGCTGAGGCGCACGAGTCTCTCCGCCTGACGTTCCACGACGCCATCGCCATCTCC
CCCGCTCTCGAGGCCCAGGGCATCTTCGGTGGCGGTGGTGCCGACGGCTCCATCGCGATCTTCCCCGAGATCGAGACCAACTTCCACCCCAACATCGGTCTCGACGAGATCATCGAGCTC
CAGAAGCCGTTCATCGCCCGTCACAACATCTCCGTCGCTGACTTCATCCAATTCGCCGGTGCTATTGGTGCCTCGAACTGCGCGGGTGCCCCCCAGCTCGCCGCCTTCGTTGGCCGCAAG
GACGCCACCCAGCCCGCCCCCGACGGCCTCGTCCCCGAGCCGTTCCACACCCCCGACCAGATCTTCGACCGTCTCGCCGACGCGTCCCAGGGCGAGTTCGACCCCATCCTCACGGTCTGG
CTCCTGACCGCGCACACCGTTGCTGCCGCCAACGACGTCGACCCGACCAAGTCCGGCCTGCCGTTCGACTCCACCCCCGAGCTCTGGGACACGCAGTTCTTCCTTGAGACCCAGCTCCGC
GGCACGAGCTTCCCCGGCTCTGGCGGCAACCAGGGCGAGGTCGAGTCTCCCCTTGCGGGCGAGATGCGTCTCCAGTCCGACCACACCATCGCTCGCGACTCCCGTACGGCGTGCGAGTGG
CAGTCGTTCGTCGACAACCAGCCCAAGGCTCAGCAGATGTTCCAGTTCGTGTTCCACGACCTCTCCATCTTCGGCCAGGACATCAACACGCTCGTCGACTGCACGGAAGTCGTCCCCATC
CCGGCTGACCCTCAGGGCCACACGCACTTCCCCGCTGGCCTGAGCAACGCCGACATCGAGCAGGCTTGCGCCGAGACACCCTTCCCAACCTTCCCCACCGACCCCGGACCCAAGACCGCC
GTTGCCCCCGTCCCCAAACCCCCTGCCGCCCGGAAGTAA

Retrieve as FASTA