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Entry information : TvLiP09 (LiP9)
Entry ID 9602
Creation 2011-10-05 (Christophe Dunand)
Last sequence changes 2011-10-05 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2012-03-27 (Catherine Mathe (Scipio))
Peroxidase information: TvLiP09 (LiP9)
Name (synonym) TvLiP09 (LiP9)
Class Lignin peroxidase    [Orthogroup: LiP002]
Taxonomy Eukaryota Fungi Basidiomycota Agaricomycetes Coriolaceae Trametes
Organism Trametes versicolor (Coriolus versicolor )    [TaxId: 5325 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value TvLiP09
start..stop		 S start..stop
TvLiP01 593 0 1..361 1..365
TvLiP02_PRL572 556 0 1..361 1..364
TvLiP02 556 0 1..361 1..364
TvLiP12_PRL572 548 0 6..361 3..364
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '9602' 'join(953561..953618,953668..953869,953935..954069,954129..954675,954734..954808,954861..954929)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 953561..953618 56 N° 2 953668..953869 200 N° 3 953935..954069 133 N° 4 954129..954675 545
N° 5 954734..954808 73 N° 6 954861..954929 67  
join(953561..953618,953668..953869,953935..954069,954129..954675,954734..954808, 954861..954929)


exon

Literature and cross-references TvLiP09 (LiP9)
DNA ref. JGI genome:   scaffold_12 (953561..954929)
Protein sequence: TvLiP09 (LiP9)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   361 (341)
PWM (Da):   %s   38743.29 (36736.2)  
PI (pH):   %s   4.76 (4.68) Peptide Signal:   %s   cut: 21 range:21-361
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MVSKFFTSLVSLAAVLGANASLTRRVACPDGRHTATNAACCALFP
LRDDLQANLFDGGKCNAEAHESLRLTFHDAIAISPALEAQGNGGGADGSITIFSHIETGFHPNIGLDEVVEKQRPFLQRHNIGVADFIQFAGALGASNCAGAPQLSAFVGRKDATRPAPDGLVPEPFHTPDQIFARIADASS
GEFDEILTVWLLTAHTIAAANDVDPTVPGSPFDSTPEIFDSQFFLETQLKGTAFTGRGPVQGEVTSPLRGEFRLQSDFAIARDQRTACEWQSFVNNQTKVQQMFQFVFHDLSILGQNIDD
LVDCTEIPIPRPLTTRTHFPAGMTHRDIEQACLETPFPTLPTDPGPRTGVAPV*

Retrieve as FASTA  
Remarks Complete sequence from genomic (5 introns).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGTTTCCAAGTTCTTCACCTCCCTCGTCTCCCTCGCTGCTGTCCTGGGTGCTAACGCGGTACGTGGACGTTGTTTAAATCGTAGTCGCCTAGCTGATTCTGTTATAGCTTCCCTGACG
CGCCGTGTTGCGTGCCCCGACGGCAGGCACACCGCTACCAACGCGGCTTGCTGCGCTCTCTTCCCTCTCCGGGACGATCTCCAGGCCAACCTCTTCGACGGCGGCAAGTGCAACGCTGAG
GCGCACGAGTCTCTCCGCTTGACGTTCCACGACGCCATCGCCATCTCGCCGGCCCTGGAGGCGCAGGGCAAAAGTTCGGGTTAGTGGCATACGCAATGCATTGCAGATCATCATTACTCA
CTAGACTACGCATTACAGCGGTGGAGGTGCCGACGGCTCCATCACGATCTTTTCGCACATCGAGACGGGCTTCCACCCCAACATCGGTCTCGACGAGGTTGTCGAGAAGCAGCGGCCTTT
CCTCCAGCGCCACAACATCGGTGTTGCTGACTTTTGTGAGTTGCACAGCACGCCCCAGGGTTTTCACGGGCTCCCGCTCATGCTTCGTTCACAGCATTCAATTCGCCGGTGCCCTCGGTG
CGTCCAACTGCGCAGGTGCTCCCCAGCTCAGCGCCTTCGTCGGCCGCAAGGACGCGACTCGCCCCGCCCCCGACGGTCTCGTCCCGGAGCCGTTCCACACGCCCGACCAGATCTTCGCCC
GCATCGCCGACGCGTCCTCGGGCGAGTTCGACGAGATCCTGACCGTCTGGCTGCTCACCGCGCACACGATCGCCGCCGCCAACGACGTCGACCCGACCGTGCCCGGCTCGCCGTTCGACT
CCACCCCCGAGATCTTCGACTCGCAGTTCTTCCTCGAGACGCAGCTCAAGGGCACCGCCTTCACCGGGCGCGGCCCCGTCCAGGGCGAGGTCACGTCCCCGCTGCGCGGCGAGTTCCGCC
TGCAGTCCGACTTCGCGATCGCGCGCGACCAGCGCACCGCGTGCGAGTGGCAGTCGTTCGTCAACAACCAGACTAAGGTCCAGCAGATGTTCCAGTTCGTCTTCCACGACCTCTCCATCC
TCGGCCAGAACATCGACGACCTCGTTGACTGCACGGAAGTGTGGTGAGTATATAGCTCTTGTCAGAAGATGCTCGATGATCTGACCTGTTCTCGCCCGCAGATCCCGATCCCCAGGCCCC
TCACCACCAGGACCCACTTCCCCGCCGGCATGACCCACCGCGACATCGAGCAGGCTCTGTGAGTCATTCATTTCCATTTAGACACTTGCCGTGCTCACACATCCTATCAGTGCTTGGAGA
CCCCCTTCCCCACCCTCCCCACCGACCCCGGACCCCGCACCGGCGTCGCCCCCGTGTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGTTTCCAAGTTCTTCACCTCCCTCGTCTCCCTCGCTGCTGTCCTGGGTGCTAACGCTTCCCTGACGCGCCGTGTTGCGTGCCCCGACGGCAGGCACACCGCTACCAACGCGGCTTGC
TGCGCTCTCTTCCCTCTCCGGGACGATCTCCAGGCCAACCTCTTCGACGGCGGCAAGTGCAACGCTGAGGCGCACGAGTCTCTCCGCTTGACGTTCCACGACGCCATCGCCATCTCGCCG
GCCCTGGAGGCGCAGGGCAACGGTGGAGGTGCCGACGGCTCCATCACGATCTTTTCGCACATCGAGACGGGCTTCCACCCCAACATCGGTCTCGACGAGGTTGTCGAGAAGCAGCGGCCT
TTCCTCCAGCGCCACAACATCGGTGTTGCTGACTTCATTCAATTCGCCGGTGCCCTCGGTGCGTCCAACTGCGCAGGTGCTCCCCAGCTCAGCGCCTTCGTCGGCCGCAAGGACGCGACT
CGCCCCGCCCCCGACGGTCTCGTCCCGGAGCCGTTCCACACGCCCGACCAGATCTTCGCCCGCATCGCCGACGCGTCCTCGGGCGAGTTCGACGAGATCCTGACCGTCTGGCTGCTCACC
GCGCACACGATCGCCGCCGCCAACGACGTCGACCCGACCGTGCCCGGCTCGCCGTTCGACTCCACCCCCGAGATCTTCGACTCGCAGTTCTTCCTCGAGACGCAGCTCAAGGGCACCGCC
TTCACCGGGCGCGGCCCCGTCCAGGGCGAGGTCACGTCCCCGCTGCGCGGCGAGTTCCGCCTGCAGTCCGACTTCGCGATCGCGCGCGACCAGCGCACCGCGTGCGAGTGGCAGTCGTTC
GTCAACAACCAGACTAAGGTCCAGCAGATGTTCCAGTTCGTCTTCCACGACCTCTCCATCCTCGGCCAGAACATCGACGACCTCGTTGACTGCACGGAAGTGATCCCGATCCCCAGGCCC
CTCACCACCAGGACCCACTTCCCCGCCGGCATGACCCACCGCGACATCGAGCAGGCTTGCTTGGAGACCCCCTTCCCCACCCTCCCCACCGACCCCGGACCCCGCACCGGCGTCGCCCCC
GTGTAA

Retrieve as FASTA