1. Browse the Database
  2. View Redoxidase
Entry information : SbPrx02 (Sobic.001G080200.1[2.1] / Sb01g007230[1.4])
Entry ID 965
Creation 2008-11-16 (Christophe Dunand)
Last sequence changes 2008-11-16 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-01 (Messaoudi)
Peroxidase information: SbPrx02 (Sobic.001G080200.1[2.1] / Sb01g007230[1.4])
Name (synonym) SbPrx02 (Sobic.001G080200.1[2.1] / Sb01g007230[1.4])
Class Class III peroxidase    [Orthogroup: Prx009]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type Pannicles
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx02
start..stop		 S start..stop
ZmPrx74 585 0 1..326 1..325
SiPrx163 565 0 1..326 1..324
OsPrx51 543 0 1..325 1..323
BdiPrx01 493 2.03e-177 1..326 1..325
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '965' 'complement(join(6181491..6181888,6183224..6183389,6183575..6183775,6183969..6184184))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 6183969..6184184 214 N° 2 6183575..6183775 199 N° 3 6183224..6183389 164 N° 4 6181491..6181888 396
complement(join(6181491..6181888,6183224..6183389,6183575..6183775,6183969..6184 184))


exon

Literature and cross-references SbPrx02 (Sobic.001G080200.1[2.1] / Sb01g007230[1.4])
Literature Klein,R.R. et al., unpublished
DNA ref. Phytozome 12:   chromosome_1 (6184184..6181491)
EST ref. GenBank:   BI141096 [5' end]  BI099504 [3' end]
Protein sequence: SbPrx02 (Sobic.001G080200.1[2.1] / Sb01g007230[1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   326 (301)
PWM (Da):   %s   34086.11 (31848.8) Transmb domain:   %s   i7-24o
PI (pH):   %s   4.37 (4.31) Peptide Signal:   %s   cut: 26 range:26-326
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MGAGIRILAAFLAVLAAAAAGGVTAQLRQDYYAAVCPDLESIVRD
AVSKKVQAQPVAVGATIRLFFHDCFVEGCDASVILVSTGNNTAEKDHPSNLSLAGDGFDTVIQAKAAVDAVPACTNQVSCADILALATRDVIALAGGPSYAVELGRLDGLVSMSTNVDGKLPPPSFNLDQLTSMFAVNNLSQADMIA
LSAAHTVGFGHCSTFADRIQPQKEDPTMNATYAVDLQAACPTGVDPNIALQLDPVTPQAFDNQYFVNLVNGRGLLTSDQVLYSDARSQPTVVAWAQNATDFELAFVDAITRLGRVGVKTD
PSQGNIRRDCAFLN

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 1, 3 introns) and 2 ESTs.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGCGCCGGGATCAGGATCCTGGCGGCGTTCTTGGCGGTGCTCGCGGCCGCGGCCGCCGGCGGTGTGACGGCGCAGCTGCGGCAGGACTACTACGCGGCGGTGTGCCCGGACCTGGAG
AGCATCGTGCGCGACGCGGTGTCCAAGAAGGTGCAGGCGCAGCCCGTCGCCGTCGGCGCCACCATCCGCCTCTTCTTCCACGATTGCTTCGTCGAGGTGCGCGCCCGCCCCCGCCTTCGT
TCCTTGCTCCATTTCCTTCCCAGAGCTTCGATTGGAGATCCCGGGCGGGCTAGCGAGCGTGCCGGGCTGCGCGCGCTCTGTCCCATCGCATGTGCGCTTAATTGCTTGCCATGTGAGTGT
GTGAGTGTGACTGTGACTGACTGAGGCTGCGATGAATGAGCTTTTGCAGGGGGCTGCGACGCGTCTGTGATCCTGGTGTCGACGGGGAACAACACGGCGGAGAAGGACCACCCGAGCAAC
CTCTCCCTGGCCGGCGACGGCTTCGACACCGTCATCCAGGCCAAGGCGGCCGTCGACGCCGTGCCGGCGTGCACCAACCAGGTGTCGTGCGCCGACATCCTGGCCCTGGCCACCCGGGAC
GTCATTGCCCTGGTACGTCGTGCTACCTCCTTGCTCGTAGCACGCACGCGGCGCAAATCAATGCCGCACGAATCGCACCTTTCCGGCCCGAACCAAATCTCCCGAACTTTTGAGGATTCC
CTGCGAAGTAAAGCGTAGTAGTGTAGTACAGCACTACGGCTACAGGCTTTGGAAGTGACGGTTCTCGATTTTTGCAGGCGCTGGCGGGCCGTCGTACGCGGTGGAGCTGGGGAGGCTGGA
CGGGCTGGTGTCCATGTCCACCAACGTCGACGGCAAGCTGCCGCCGCCGTCGTTCAACCTGGACCAGCTGACGAGCATGTTCGCCGTCAACAACCTGTCGCAGGCCGACATGATTGCTCT
ATCCGGTGAGTAAATTATTACTGCTCCAACCAAATTACTACTCCAAGTCTCCAGTCAGTGCTTTCTTTCTTCTAAAGAAAAGTTCTAGTCCAACTGCTGTACCAGCATTAGCGAAGTACT
CCCTCCGTCCACGAAAGAGTCAATTTCTAGAGTTGTCCTAAGTCAAACTTTTTAAACTTTGACCAAATTTCTAGAAAAAAATGCTAAGATTTATAGTATCAAATTAGTATTATTAGATTC
ATCATAGAATATATTTTCATATAATGTGTATTTTATATTATAGATGTTGTTACTCTTTTTTATAAAGTTAGTCAAACTTTAAAAAGTTTGACTGGCACGAATCCTAGGAATTGATTCTTT
CGGGGACGGAGGGAGTACGTACTTACACAGGCTAGATTTCCATGTGCTCCCGTTCCATGTCTTTCAAGTCAAGCAAAGGGCCCAACCCAACCAAACCAAGGCCAACGCCGCCCACCTCTG
CAATTAAAACTGTAACATTTTGTGTGGTCTCGAGGGATCCGTAGCACGATAGAAAATGCATTATCCCCCTAGGTTAGAACAGCAGAGTGCAGAGTTGATCAGTTTTATTATCACAGACGA
ATAGTAGTAGAGTGTGTGGCACTGCAGCTGAGTAGTAGATCTGAAATGGGTCAACTGTGGCGACTGTCTCTGTCTGGAATGCTTGGTGGCCGTTCTTGCTTGCACAGTTGCACGTGAAAG
AAAGATCAGCATCGCATTATTGTATTGTACTCATACCATGGCCTCCACTGCTTAGGTAGGCATAATCCGACCCAGAGACCGTTTGCTACTGAGACAGCGCCCAGCTACATTATTCGGCCC
ATTGATTGAGGCACATACAGGCCTGCCAAATGAGCTGTCCAAGGCCTTGTTTAGTTCCAAAATATTTTGCAAAATCGACACTGTAGTTTTTTCGTTTGTATTTGACAAATATTGTCCAAT
TATAGACTAACTGGGCTCAAAAGATTCATCTCGTCAATTTCGACCAAACTGTTTAATTAGTTTTTATTTTTGTCTATATTTAATACTTCATGCATGTGTCTAAAGATTCGATGTGACGGG
GAATCTGAAAAATTTTGCAAATTTTTTTGGACTAAACAAGGCCCAAAAAAGAAACAAAAACTCGTGGCATCACGAAGCAGGACTGCAGGAACACACCGCAGAGAAACATATTTTTTAAAT
TGAAAAGAAAAGGTTTCTGCACTGCAATCTGCATACATGATGATCCACTGAAAACTCTGAGAAACAGCGTGAAATTTGTATGCGTGTTGGTTCCGAGTGGCACGTTGTTGAACTGTTTGT
TCCTGTTGCAATCCTTGCAGCGCGGCGCACACGGTGGGGTTCGGGCACTGCAGCACGTTCGCGGACCGGATCCAGCCGCAGAAGGAGGACCCGACGATGAACGCGACGTACGCGGTGGAC
CTGCAGGCGGCGTGCCCGACGGGTGTGGACCCCAACATCGCGCTGCAGCTGGACCCCGTCACGCCGCAGGCCTTCGACAACCAGTACTTCGTCAACCTGGTGAACGGCCGCGGGCTCCTC
ACCTCCGACCAGGTGCTCTACTCCGACGCCCGGTCGCAGCCCACCGTGGTGGCGTGGGCGCAGAACGCCACCGACTTCGAGCTCGCCTTCGTCGACGCCATCACCAGGCTCGGCCGCGTC
GGCGTCAAGACCGACCCGTCGCAGGGGAACATCCGCCGCGACTGCGCCTTCCTCAACTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGCGCCGGGATCAGGATCCTGGCGGCGTTCTTGGCGGTGCTCGCGGCCGCGGCCGCCGGCGGTGTGACGGCGCAGCTGCGGCAGGACTACTACGCGGCGGTGTGCCCGGACCTGGAG
AGCATCGTGCGCGACGCGGTGTCCAAGAAGGTGCAGGCGCAGCCCGTCGCCGTCGGCGCCACCATCCGCCTCTTCTTCCACGATTGCTTCGTCGAGGGCTGCGACGCGTCTGTGATCCTG
GTGTCGACGGGGAACAACACGGCGGAGAAGGACCACCCGAGCAACCTCTCCCTGGCCGGCGACGGCTTCGACACCGTCATCCAGGCCAAGGCGGCCGTCGACGCCGTGCCGGCGTGCACC
AACCAGGTGTCGTGCGCCGACATCCTGGCCCTGGCCACCCGGGACGTCATTGCCCTGGCTGGCGGGCCGTCGTACGCGGTGGAGCTGGGGAGGCTGGACGGGCTGGTGTCCATGTCCACC
AACGTCGACGGCAAGCTGCCGCCGCCGTCGTTCAACCTGGACCAGCTGACGAGCATGTTCGCCGTCAACAACCTGTCGCAGGCCGACATGATTGCTCTATCCGCGGCGCACACGGTGGGG
TTCGGGCACTGCAGCACGTTCGCGGACCGGATCCAGCCGCAGAAGGAGGACCCGACGATGAACGCGACGTACGCGGTGGACCTGCAGGCGGCGTGCCCGACGGGTGTGGACCCCAACATC
GCGCTGCAGCTGGACCCCGTCACGCCGCAGGCCTTCGACAACCAGTACTTCGTCAACCTGGTGAACGGCCGCGGGCTCCTCACCTCCGACCAGGTGCTCTACTCCGACGCCCGGTCGCAG
CCCACCGTGGTGGCGTGGGCGCAGAACGCCACCGACTTCGAGCTCGCCTTCGTCGACGCCATCACCAGGCTCGGCCGCGTCGGCGTCAAGACCGACCCGTCGCAGGGGAACATCCGCCGC
GACTGCGCCTTCCTCAACTGA

Retrieve as FASTA