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Entry information : PgigLiP02
Entry ID 9658
Creation 2011-11-08 (Christophe Dunand)
Last sequence changes 2011-11-08 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2012-03-27 (Catherine Mathe (Scipio))
Peroxidase information: PgigLiP02
Name PgigLiP02
Class Lignin peroxidase    [Orthogroup: LiP001]
Taxonomy Eukaryota Fungi Basidiomycota Agaricomycetes Phanerochaetaceae Phlebiopsis
Organism Phlebiopsis gigantea    [TaxId: 82310 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PgigLiP02
start..stop		 S start..stop
PgigLiP01 628 0 1..363 1..363
PcarLiP01 536 0 1..363 1..369
PcLiP04_RP78 535 0 1..363 1..368
PcLiP04_BKMF1767 530 0 1..363 1..368
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '9658' 'join(1653..1704,1763..1970,2024..2238,2295..2336,2387..2465,2521..2646,2707..2822,2877..3052,3111..3175,3226..3253)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1653..1704 50 N° 2 1763..1970 206 N° 3 2024..2238 213 N° 4 2295..2336 40
N° 5 2387..2465 77 N° 6 2521..2646 124 N° 7 2707..2822 114 N° 8 2877..3052 174
N° 9 3111..3175 63 N° 10 3226..3253 26  
join(1653..1704,1763..1970,2024..2238,2295..2336,2387..2465,2521..2646,2707..282 2,2877..3052,3111..3175,3226..3253)


exon

Literature and cross-references PgigLiP02
DNA ref. JGI genome:   scaffold_106 (1653..3253)
Protein sequence: PgigLiP02
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   368 (350)
PWM (Da):   %s   38912.08 (37024.0)  
PI (pH):   %s   4.27 (4.18) Peptide Signal:   %s   cut: 19 range:19-368
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MSFKQLLVAVSAALLTKSAVIEKRATCATGQTTANAACCAWFPVL
EDIQQNMFAGGQCNAEAHEALRLVFHDGIAVSPAMEARGQFGGGGADGSIMLFDEIETAFHPNIGLDDVVALEKPFVAKHGVSPADFIPFAGAVAVSNCAGAPEMQFFIGRKATQAAPDGLVPEPFHTVDQILERTNDAGQFDE
LETVWMLSAHSIAASNDVDPTVVGLPFDSTPEQFDGQFFLDTQLRGVLFPGSGGNQGEVESAVAGEIRLQSDHNFARDSRTACEWQSFNNQTKLQADFQFIFTAIATLGQDMDSLIDCSD
VIPAPKPQNFGPTRFPPGKSNADIEQCAATPFPTLATAPGPATSVARINPPFKVSH

Retrieve as FASTA  
Remarks Complete sequence from genomic (10 introns).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTCCTTCAAACAATTGCTCGTCGCAGTGTCCGCTGCTCTCCTCACCAAGTGTGTACGCGCTCCGTTCGCGCCTTCCCATTGCGCACCTGCTAACATGTTCCTCTCGCTAGCTGCGGTC
ATCGAGAAGCGGGCGACGTGCGCGACCGGACAGACGACTGCGAACGCGGCGTGCTGCGCTTGGTTCCCTGTGCTCGAAGACATCCAACAGAACATGTTCGCCGGCGGCCAGTGCAACGCC
GAGGCGCACGAGGCCCTGCGCCTTGTCTTCCACGACGGCATCGCCGTCTCGCCCGCCATGGAGGCACGCGGTCAGTTCGGGGGTACGCTCGCTTGCTCTTCACGCGACATGAGTATCGTC
TGACAGCGGCGGCAGCGGCGGCGGTGCGGACGGCTCTATCATGCTATTTGACGAGATCGAGACTGCGTTCCACCCCAACATCGGCCTCGACGACGTTGTCGCACTCGAGAAGCCCTTTGT
GGCGAAGCACGGCGTGAGCCCCGCCGACTTCATCCCCTTCGCGGGGGCGGTGGCCGTCAGCAACTGCGCCGGTGCTCCGGAGATGCAGTTCTTCATCGGCCGCAAGATTGTGGTCAGTAC
TTTCGGGATTCTCCCGACTTGAAGACATGTTCATGCTCGTATCTACAGCCACCCAGGCCGCCCCCGACGGCCTCGTCCCAGAGCCCTTCCCCGCGAGTCCATCTCCGTGTCCTGCTCCGC
TTGTGCTAATACTATGCTTTAGATACGGTCGACCAGATCCTCGAGCGCACCAATGACGCCGGTCAATTCGACGAGCTTGAAACCGTCTGGATGCTCTCCGCGCGTACGCCCGCGTCTCGC
CCTTGTATCCGGCCCCCACTGATACCCGTTCGCGCCAGCCACTCGATCGCGGCGTCCAACGACGTCGACCCGACCGTCGTCGGCCTGCCATTTGACTCGACGCCGGAGCAATTTGACGGC
CAGTTCTTCCTTGATACGCAGCTCCGCGGTGTCCTCTTCCCCGGGGGTGAGCCCTGCCTCTTCTGCACGATAATATGCTGTATTGCTGAGACGGAGTGTGGTGCAGCTCGGGCGGGAATC
AGGGTGAGGTCGAGTCCGCCGTGGCGGGTGAGATCCGCCTGCAGTCCGACCACAACTTTGCCCGGGACAGCCGCACCGCGTGCGAGTGGCAGTCCTTCGTCACAGTGCGTACCCCTCCTC
CATCGTCCTCGCGGCGCGGCGCTGACGCATGTGTACAGACAACCAGACAAAGCTGCAGGCGGACTTCCAGTTCATCTTCACCGCCATCGCGACGCTCGGCCAGGACATGGACAGCCTCAT
CGACTGCTCGGACGTCATTCCCGCGCCCAAGCCCCAGAACTTCGGCCCCACGCGCTTCCCACCCGGCAAGTCGAACGCGGACATCGAGCAGGCCCCGTACGTCCGCGCCCATTTGTGCGC
CGGGGCATGCTGGCGAGTGCTGACGATCCGACAGTGTGCGGCCACGCCGTTCCCGACCCTTGCAACTGCGCCCGGCCCTGCGACGAGCGTCGCGCGCATATGTGGGTGATTACGTTCGAT
GGTTAATCGCGCAAGGCTAACGATACTCTAGCAACCCTCCGTTCAAAGTCAGCCACTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTCCTTCAAACAATTGCTCGTCGCAGTGTCCGCTGCTCTCCTCACCAAGTCTGCGGTCATCGAGAAGCGGGCGACGTGCGCGACCGGACAGACGACTGCGAACGCGGCGTGCTGCGCT
TGGTTCCCTGTGCTCGAAGACATCCAACAGAACATGTTCGCCGGCGGCCAGTGCAACGCCGAGGCGCACGAGGCCCTGCGCCTTGTCTTCCACGACGGCATCGCCGTCTCGCCCGCCATG
GAGGCACGCGGTCAGTTCGGCGGCGGCGGTGCGGACGGCTCTATCATGCTATTTGACGAGATCGAGACTGCGTTCCACCCCAACATCGGCCTCGACGACGTTGTCGCACTCGAGAAGCCC
TTTGTGGCGAAGCACGGCGTGAGCCCCGCCGACTTCATCCCCTTCGCGGGGGCGGTGGCCGTCAGCAACTGCGCCGGTGCTCCGGAGATGCAGTTCTTCATCGGCCGCAAGATTGCCACC
CAGGCCGCCCCCGACGGCCTCGTCCCAGAGCCCTTCCATACGGTCGACCAGATCCTCGAGCGCACCAATGACGCCGGTCAATTCGACGAGCTTGAAACCGTCTGGATGCTCTCCGCCCAC
TCGATCGCGGCGTCCAACGACGTCGACCCGACCGTCGTCGGCCTGCCATTTGACTCGACGCCGGAGCAATTTGACGGCCAGTTCTTCCTTGATACGCAGCTCCGCGGTGTCCTCTTCCCC
GGCTCGGGCGGGAATCAGGGTGAGGTCGAGTCCGCCGTGGCGGGTGAGATCCGCCTGCAGTCCGACCACAACTTTGCCCGGGACAGCCGCACCGCGTGCGAGTGGCAGTCCTTCGTCAAC
AACCAGACAAAGCTGCAGGCGGACTTCCAGTTCATCTTCACCGCCATCGCGACGCTCGGCCAGGACATGGACAGCCTCATCGACTGCTCGGACGTCATTCCCGCGCCCAAGCCCCAGAAC
TTCGGCCCCACGCGCTTCCCACCCGGCAAGTCGAACGCGGACATCGAGCAGGCCTGTGCGGCCACGCCGTTCCCGACCCTTGCAACTGCGCCCGGCCCTGCGACGAGCGTCGCGCGCATC
AACCCTCCGTTCAAAGTCAGCCACTGA

Retrieve as FASTA