1. Browse the Database
  2. View Redoxidase
Entry information : GsppCIIBB05
Entry ID 9692
Creation 2011-11-15 (Christophe Dunand)
Last sequence changes 2012-12-04 (Christophe Dunand)
Sequence status complete
Reviewer Catherine Mathe
Last annotation changes 2017-03-02 (Catherine Mathe)
Peroxidase information: GsppCIIBB05
Name GsppCIIBB05
Class Other class II peroxidase type B    [Orthogroup: CIIBB001]
Taxonomy Fungi/Metazoa; Fungi; Basidiomycota; Basidiomycota
Organism Ganoderma sp. 10597 SS1    [TaxId: 767862 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GsppCIIBB05
start..stop		 S start..stop
TvCIIBB02_IFO30340 550 0 1..364 1..365
TvCIIBB02_PRL572 548 0 1..364 1..365
TvCIIBB02 548 0 1..364 1..365
TvCIIBB02_KN9522 542 0 1..363 1..364
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '9692' 'complement(join(1448352..1448364,1448432..1448987,1449041..1449162,1449219..1449353,1449417..1449624,1449689..1449749))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1449689..1449749 59 N° 2 1449417..1449624 206 N° 3 1449219..1449353 133 N° 4 1449041..1449162 120
N° 5 1448432..1448987 554 N° 6 1448352..1448364 11  
complement(join(1448352..1448364,1448432..1448987,1449041..1449162,1449219..1449 353,1449417..1449624,1449689..1449749))


exon

Literature and cross-references GsppCIIBB05
DNA ref. JGI genome:   scaffold_3 (1449749..1448352)
Protein sequence: GsppCIIBB05
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   364 (343)
PWM (Da):   %s   38488.9 (36362.7)  
PI (pH):   %s   4.13 (4.11) Peptide Signal:   %s   cut: 22 range:22-364
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAFKALLSIVTLVAALQVADAALTRRVACPDGKNTATNAACCQLF
AIADDLQQNLFDNGGCGEDVHESLRLTFHDAIAFSPSMNARGQNGGGGADGSIALFESIETNFHASLGLDEIVNAQRPIVQRHNITTADFIMFAAAVGVANCPGAPQLDVFLGRADATQPSPDGLIPEPDPPDMLLARMADAGF
DPIETVWLLSSHTIAAADLVDPTIPGTPFDSTPELFDTQFFIETQLRGTLFPGTGGNQGEVESPLRGEIRLQSDHLLARDSRTACEWQSFVNNQPKIQGRFHDAFHDLSLLGHDINDLID
CSEVIQTPPPPASNAHFPAGLSNADVEQACADTPFPTLPTDPGPVTSVAPVPPS

Retrieve as FASTA  
Remarks complete sequence from genomic (5 introns). Incorrect prediction from JGI (last very short intron is missing)
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCTTCAAAGCTCTTCTCTCCATCGTCACCCTCGTGGCGGCCCTTCAGGTCGCAGACGGTGCGGCCGCCCTCCCTCTTCACTTAGTTCGGAGCGCGGGCTCTAACGTATCTGCGCGT
TTTAGCTCTGCCCTCACGCGCCGCGTCGCGTGCCCAGACGGGAAGAACACTGCAACGAACGCGGCGTGCTGCCAGCTCTTCGCGATTGCGGACGACCTCCAGCAGAACCTCTTCGACAAC
GGTGGATGCGGTGAGGACGTGCACGAGTCACTCCGTCTCACTTTCCACGACGCCATCGCCTTCTCTCCCTCGATGAACGCTCGTGGCCAGAACGGGTCCGTACCACTCGCCTTATTCTTA
ACACATTGACGTGTCTTGACTATGTCATTGGCTTGTAGCGCGGTGGAGGTGCCGACGGTTCCATTGCGCTCTTCGAGTCCATCGAGACCAACTTCCACGCGAGCTTGGGGCTCGACGAGA
TCGTCAACGCCCAGCGCCCCATCGTCCAGAGGCACAACATCACGACCGCTGACTTGTACGCGTACCGTTATCATTCTGTTGACGCGCGAGGGCCCTAATGTGAAAACGTAGTATATCATG
TTCGCGGCCGCGGTCGGTGTTGCGAACTGCCCTGGTGCGCCCCAGCTTGACGTCTTCCTCGGCCGTGCGGATGCGACCCAGCCCTCTCCTGATGGGCTCATCCCCGAGCCGTTCGGTACG
TAACATTCACCTTCATTACCCTTCAGCCAACTCACGAGGCCCTCCCAGACACCCCCCTGACATGCTCCTCGCCCGCATGGCTGACGCTGGCTTTGACCCCATCGAGACTGTCTGGCTACT
CTCCTCGCACACCATCGCCGCGGCAGACCTCGTCGACCCCACGATCCCGGGCACGCCCTTCGACTCGACGCCCGAGCTCTTCGACACCCAGTTCTTCATCGAGACCCAGCTCCGTGGCAC
GCTCTTCCCCGGCACAGGGGGCAACCAGGGCGAGGTCGAGTCCCCGCTCCGCGGCGAGATCCGTCTCCAGTCGGACCACCTCCTCGCGCGCGACTCGCGCACGGCGTGCGAGTGGCAGTC
GTTCGTGAACAACCAGCCCAAGATCCAGGGCCGCTTCCACGACGCGTTCCACGACCTCTCGCTCCTCGGCCACGACATCAACGACCTCATCGACTGCTCCGAAGTCATCCAGACCCCGCC
CCCGCCCGCGAGCAACGCGCACTTCCCCGCCGGGCTCTCCAACGCCGATGTCGAGCAGGCGTGTGCCGACACCCCCTTCCCCACCCTCCCGACTGACCCCGGCCCGGTCACCTCGGTCGC
CCCCGTGTAAGTGACATCCAATCATCGCGGTTGCGTTACGAGAGGGACTGACGGCGGTTGCTTTATAACTTAGCCCCCCCCGTCCTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCTTCAAAGCTCTTCTCTCCATCGTCACCCTCGTGGCGGCCCTTCAGGTCGCAGACGCTGCCCTCACGCGCCGCGTCGCGTGCCCAGACGGGAAGAACACTGCAACGAACGCGGCG
TGCTGCCAGCTCTTCGCGATTGCGGACGACCTCCAGCAGAACCTCTTCGACAACGGTGGATGCGGTGAGGACGTGCACGAGTCACTCCGTCTCACTTTCCACGACGCCATCGCCTTCTCT
CCCTCGATGAACGCTCGTGGCCAGAACGGCGGTGGAGGTGCCGACGGTTCCATTGCGCTCTTCGAGTCCATCGAGACCAACTTCCACGCGAGCTTGGGGCTCGACGAGATCGTCAACGCC
CAGCGCCCCATCGTCCAGAGGCACAACATCACGACCGCTGACTTTATCATGTTCGCGGCCGCGGTCGGTGTTGCGAACTGCCCTGGTGCGCCCCAGCTTGACGTCTTCCTCGGCCGTGCG
GATGCGACCCAGCCCTCTCCTGATGGGCTCATCCCCGAGCCGTTCGACCCCCCTGACATGCTCCTCGCCCGCATGGCTGACGCTGGCTTTGACCCCATCGAGACTGTCTGGCTACTCTCC
TCGCACACCATCGCCGCGGCAGACCTCGTCGACCCCACGATCCCGGGCACGCCCTTCGACTCGACGCCCGAGCTCTTCGACACCCAGTTCTTCATCGAGACCCAGCTCCGTGGCACGCTC
TTCCCCGGCACAGGGGGCAACCAGGGCGAGGTCGAGTCCCCGCTCCGCGGCGAGATCCGTCTCCAGTCGGACCACCTCCTCGCGCGCGACTCGCGCACGGCGTGCGAGTGGCAGTCGTTC
GTGAACAACCAGCCCAAGATCCAGGGCCGCTTCCACGACGCGTTCCACGACCTCTCGCTCCTCGGCCACGACATCAACGACCTCATCGACTGCTCCGAAGTCATCCAGACCCCGCCCCCG
CCCGCGAGCAACGCGCACTTCCCCGCCGGGCTCTCCAACGCCGATGTCGAGCAGGCGTGTGCCGACACCCCCTTCCCCACCCTCCCGACTGACCCCGGCCCGGTCACCTCGGTCGCCCCC
GTCCCCCCGTCCTAA

Retrieve as FASTA