Entry information : BaLiP02
Entry ID 9723
Creation 2011-11-17 (Christophe Dunand)
Last sequence changes 2012-04-02 (Christophe Dunand)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2012-04-02 (Christophe Dunand)
Peroxidase information: BaLiP02
Name BaLiP02
Class Lignin peroxidase     [Orthogroup: LiP003]*
Taxonomy Eukaryota Fungi Basidiomycota Agaricomycetes Meruliaceae Bjerkandera
Organism Bjerkandera adusta    [TaxId: 5331 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BaLiP02
start..stop
S start..stop
BaLiP05 590 0 1..366 1..372
BaLiP04 583 0 1..356 1..362
BaLiP03_IFO5307 573 0 1..366 1..372
BaLiP03 572 0 1..366 1..372
Literature and cross-references BaLiP02
DNA ref. JGI genome:   scaffold_29 (118472..119837)
Protein sequence: BaLiP02
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   365 (347)
PWM (Da):   %s   39000.72 (37172.7)  
PI (pH):   %s   5.54 (5.34) Peptide Signal:   %s   cut: 19 range:19-365
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MAFKQLLTAL SAALVAQAAI TKRVACPDGK HTATNAALFA ARDDIQKNMF EGGKCNDVAH EALRLTFHDA VAFSPKMTAR GQFGGNGADG SIMTFANIET PNIGLDEIVA IEQPLQQKHN  MNPGDFIHFA GALAVTNCPG AARISFSIGR PVATRAAPDG LVPEPFHLVD QIFDRMNDAL EFDPLETVWD LIAHTTGAAN DVDPTIPRTP FDSTPTLFDG QFFIDTQLRG ILFPGKTGIQ  GTVQSPLKGE MRLQSDHLIA RDSRTACEW* SFATDQAKLH DRFQFVLETF AIVGQDPSKM IDCSEVIPIP KSLTPAQLVG HLPAGKIHTD IEQACADTAF PSLKADPGPA TAVPPVPKVR 
TSPPGS 

Retrieve as FASTA  
Remarks Complete or pseudogene from genomic (6 introns). (Two frame shifts, sequencing error and one stop codon in frame). Uncorrect prediction from JGI (extra intron => due to stop codon in frame) join(118472..118665,118717..118773,118828..118925,118988..119041,119094..119638,119691..119755,119807..119837)
DNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCCTTCA AGCAACTCCT CACCGCACTC TCGGCTGCTC TCGTGGCGCA AGCCGCGATT ACAAAGCGTG TCGCTTGTCC GGACGGCAAG CACACCGCTA CAAACGCCGC CCTCTTCGCT  GCCCGCGACG ACATTCAGAA GAACATGTTC GAGGGTGGCA AATGTAACGA TGTCGCCCAC GAAGCACTTC GTCTGTAAGT GATGCGTAGC TACTGATTGT CTTTTCGCAA CTCACTCGTT  TTTAGGACCT TCCACGACGC TGTTGCGTTC TCGCCCAAGA TGACCGCCCG CGGCCAGTTT GGGTACGTGC TCCACTATCT TCTGCATGTT TTGTTCGCAA CTTACACCAA TTGTAGCGGG  AACGGTGCCG ACGGCTCCAT CATGACCTTC GCTAACATCG AAACGACGTA CCACCCAAAA TTTGGCCTCG ATGAGATCGT CGCTATTGAG CAGCCGTTGC AGCAGAAGCA CAACATGAAC  CCTGGCGATT TCATCCACTT TGCGGGCGCC CTCGCAGTGA CCAACTGCCC TGGCGCAGCC AGGATCAGCT TCTCGATCGG TCGCCCTGTT GGTGGGTCTT ATGTTTGTCC TATGCCGTCA  AAACTGTGCT CAAAGTATTC AAGCCACGCG CGCCGCCCCC GACGGTCTCG TCCCCGAACC ATTCCACCTG GTTGACCAAA TCTTCGACCG CATGAACGAT GCCCTCGAAT TCGACCCTCT  CGAGACTGTC TGGGATCTCA TCGCTCACAC CACCGGCGCT GCTAACGACG TCGACCCGAC CATCCCGCGC ACGCCCTTCG ACTCTACACC CACTCTGTTC GACGGCCAGT TCTTCATCGA  CACCCAACTC CGTGGCATAC TCTTCCCCGG CAAGACCGGC ATCCAGGGCA CCGTGCAGTC TCCCCTCAAG GGCGAGATGC GCCTTCAGTC CGACCACCTG ATCGCTCGTG ACTCTCGCAC  GGCGTGCGAG TGGTAGTCGT TTGCAACGGA TCAGGCTAAG CTCCATGATC GCTTCCAGTT CGTCCTCGAG ACGTTCGCTA TAGTCGGCCA GGATCCCTCG AAAATGATAG ACTGCTCCGA  GGTCATCCCC ATCCCGAAGA GCCTCACCCC TGCTCAACTC GTTGGTCACC TCCCCGCTGG CAAGATTCAC ACCGACATCG AACAGGCGGT ACGTTGAGCT CCAGAATGCG GTTAAATTCG  GTATTGACTA TTTTCTGTAG TGCGCTGACA CCGCTTTCCC GTCCCTTAAA GCTGACCCCG GCCCGGCTAC CGCTGTTCCT CCCGTGTAAG TCTGTTTATT CTGTGCTCAA TCTCTCACTG 
ACCCAGAGCT ATCTAGCCCG AAGGTCAGGA CTTCACCACC CGGATCT 

Retrieve as FASTA