Sequence Properties
first value : protein second value (mature protein)
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Length (aa): |
365 (347) |
PWM (Da): |
39000.72 (37172.7) |
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PI (pH):
| 5.54 (5.34) |
Peptide Signal:
| cut: 19 range:19-365 |
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Sequence 0
Send to BLAST
Send to Peroxiscan
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
MAFKQLLTAL SAALVAQAAI TKRVACPDGK HTATNAALFA ARDDIQKNMF EGGKCNDVAH EALRLTFHDA VAFSPKMTAR GQFGGNGADG SIMTFANIET PNIGLDEIVA IEQPLQQKHN
MNPGDFIHFA GALAVTNCPG AARISFSIGR PVATRAAPDG LVPEPFHLVD QIFDRMNDAL EFDPLETVWD LIAHTTGAAN DVDPTIPRTP FDSTPTLFDG QFFIDTQLRG ILFPGKTGIQ
GTVQSPLKGE MRLQSDHLIA RDSRTACEW* SFATDQAKLH DRFQFVLETF AIVGQDPSKM IDCSEVIPIP KSLTPAQLVG HLPAGKIHTD IEQACADTAF PSLKADPGPA TAVPPVPKVR
TSPPGS
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Retrieve as FASTA
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Remarks |
Complete or pseudogene from genomic (6 introns). (Two frame shifts, sequencing error and one stop codon in frame). Uncorrect prediction from JGI (extra intron => due to stop codon in frame)
join(118472..118665,118717..118773,118828..118925,118988..119041,119094..119638,119691..119755,119807..119837)
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DNA ►
Send to BLAST
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGCCTTCA AGCAACTCCT CACCGCACTC TCGGCTGCTC TCGTGGCGCA AGCCGCGATT ACAAAGCGTG TCGCTTGTCC GGACGGCAAG CACACCGCTA CAAACGCCGC CCTCTTCGCT
GCCCGCGACG ACATTCAGAA GAACATGTTC GAGGGTGGCA AATGTAACGA TGTCGCCCAC GAAGCACTTC GTCTGTAAGT GATGCGTAGC TACTGATTGT CTTTTCGCAA CTCACTCGTT
TTTAGGACCT TCCACGACGC TGTTGCGTTC TCGCCCAAGA TGACCGCCCG CGGCCAGTTT GGGTACGTGC TCCACTATCT TCTGCATGTT TTGTTCGCAA CTTACACCAA TTGTAGCGGG
AACGGTGCCG ACGGCTCCAT CATGACCTTC GCTAACATCG AAACGACGTA CCACCCAAAA TTTGGCCTCG ATGAGATCGT CGCTATTGAG CAGCCGTTGC AGCAGAAGCA CAACATGAAC
CCTGGCGATT TCATCCACTT TGCGGGCGCC CTCGCAGTGA CCAACTGCCC TGGCGCAGCC AGGATCAGCT TCTCGATCGG TCGCCCTGTT GGTGGGTCTT ATGTTTGTCC TATGCCGTCA
AAACTGTGCT CAAAGTATTC AAGCCACGCG CGCCGCCCCC GACGGTCTCG TCCCCGAACC ATTCCACCTG GTTGACCAAA TCTTCGACCG CATGAACGAT GCCCTCGAAT TCGACCCTCT
CGAGACTGTC TGGGATCTCA TCGCTCACAC CACCGGCGCT GCTAACGACG TCGACCCGAC CATCCCGCGC ACGCCCTTCG ACTCTACACC CACTCTGTTC GACGGCCAGT TCTTCATCGA
CACCCAACTC CGTGGCATAC TCTTCCCCGG CAAGACCGGC ATCCAGGGCA CCGTGCAGTC TCCCCTCAAG GGCGAGATGC GCCTTCAGTC CGACCACCTG ATCGCTCGTG ACTCTCGCAC
GGCGTGCGAG TGGTAGTCGT TTGCAACGGA TCAGGCTAAG CTCCATGATC GCTTCCAGTT CGTCCTCGAG ACGTTCGCTA TAGTCGGCCA GGATCCCTCG AAAATGATAG ACTGCTCCGA
GGTCATCCCC ATCCCGAAGA GCCTCACCCC TGCTCAACTC GTTGGTCACC TCCCCGCTGG CAAGATTCAC ACCGACATCG AACAGGCGGT ACGTTGAGCT CCAGAATGCG GTTAAATTCG
GTATTGACTA TTTTCTGTAG TGCGCTGACA CCGCTTTCCC GTCCCTTAAA GCTGACCCCG GCCCGGCTAC CGCTGTTCCT CCCGTGTAAG TCTGTTTATT CTGTGCTCAA TCTCTCACTG
ACCCAGAGCT ATCTAGCCCG AAGGTCAGGA CTTCACCACC CGGATCT
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Retrieve as FASTA
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