Entry information : GmPrx[P]318
Entry ID 9751
Creation 2011-10-06 (Qiang Li (Scipio))
Last sequence changes 2011-12-14 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2011-11-18 (Qiang Li)
Peroxidase information: GmPrx[P]318
Name GmPrx[P]318
Class Class III peroxidase     [Orthogroup: Prx005]*
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Glycine
Organism Glycine max (soybean)    [TaxId: 3847 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GmPrx[P]318
start..stop
S start..stop
GmPrx320 268 5.84e-91 69..210 181..320
GmPrx320 128 3.61e-36 3..69 1..67
MtPrx66 247 1.42e-82 60..210 171..320
MtPrx66 104 4.25e-27 7..69 5..67
NnPrx99 240 5.6e-80 69..210 184..323
NnPrx99 83 3.82e-19 6..69 5..70
NtPrx55-1B 240 7.06e-80 69..210 183..322
NtPrx55-1B 74 4.81e-16 10..69 6..69
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '9751' 'join(9356972..9357175,9357446..9357867)' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 9356972..9357175 202 N° 2 9357446..9357867 420  
join(9356972..9357175,9357446..9357867)


exon

Literature and cross-references GmPrx[P]318
DNA ref. Phytozome 12:   Gm17 (9356972..9357867)
Protein sequence: GmPrx[P]318
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   209 (188)
PWM (Da):   %s   22659.47 (20397.3)  
PI (pH):   %s   7.88 (7.88) Peptide Signal:   %s   cut: 22 range:22-209
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MKMDAILGYLIILVMTSAVQAQLKAGFYSTPCPNAEAIVGSTVVSHFSKDLTIAPGLLRLHFHDCFVQGAHTIGQTECRFFSYRLYNFTTSGSPDPTINVAFLAQLQALCPKNGDGLRRV
ALDKDSQAKFDVSFFKNVRDGxNGVLESDQRLWADSSTQSVVQNYAGNVxRG*LGLRFDFEFPKAMIKLSSIEVKTGTDGEIREVCSKFN

Retrieve as FASTA  
Remarks Psedogene from genomic. Incorrect prediction from phytozome (Exon 2 was missing which was not found in genomic; Frame shift in Exon 4).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAAAATGGATGCCATATTGGGCTACCTAATAATTTTAGTGATGACTTCGGCAGTACAAGCCCAATTGAAAGCTGGGTTTTATTCTACTCCATGTCCAAATGCTGAGGCAATTGTAGGG
TCCACCGTTGTATCCCACTTCAGCAAAGATCTAACCATTGCTCCTGGCCTGCTCAGGCTTCATTTCCATGATTGCTTTGTCCAA
AAGTAAGTTAATCTCAACCTCAAATCCTTCACTCAC
GTAAAGCCGTAAATGTATAAAAGAAGAGGTGTATGAACACTTAAAAAATGAGAAACTATACATCAAGATTAAAAATGGCCAACATATATATCTTAGTAATAAACTATGAGTTGTTAACAT
TTGTTCTTCTAATTTTTACTCAACATTTAACAATTATAATTTGACTTCACTTTCTTCATAGTGATCAAGTCTTAATTTCTTTTCCTAAAAGTATATGACTTATTTGACTGTCTTCGGGTG
CACATACCATAGGCCAGACAGAATGCAGATTCTTCAGTTATCGTCTATACAATTTCACAACCTCTGGTAGTCCTGATCCCACTATAAACGTAGCTTTTTTAGCTCAACTTCAAGCACTTT
GTCCAAAAAATGGAGATGGCTTGAGAAGGGTGGCCTTGGACAAAGATAGTCAAGCTAAATTTGATGTTAGTTTCTTCAAGAATGTGCGTGATGGTANNAATGGGGTTCTTGAGTCAGACC
AGAGGTTGTGGGCAGATTCTTCTACTCAAAGTGTGGTGCAAAATTATGCTGGGAATGTTANNAGAGGGTAACTGGGGTTGAGGTTTGACTTTGAATTTCCAAAGGCCATGATTAAGTTAA
GTAGCATAGAGGTGAAGACTGGTACTGATGGAGAGATCAGAGAAGTGTGTTCAAAATT

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAAAATGGATGCCATATTGGGCTACCTAATAATTTTAGTGATGACTTCGGCAGTACAAGCCCAATTGAAAGCTGGGTTTTATTCTACTCCATGTCCAAATGCTGAGGCAATTGTAGGG
TCCACCGTTGTATCCCACTTCAGCAAAGATCTAACCATTGCTCCTGGCCTGCTCAGGCTTCATTTCCATGATTGCTTTGTCCAA
GGTGCACATACCATAGGCCAGACAGAATGCAGATTC
TTCAGTTATCGTCTATACAATTTCACAACCTCTGGTAGTCCTGATCCCACTATAAACGTAGCTTTTTTAGCTCAACTTCAAGCACTTTGTCCAAAAAATGGAGATGGCTTGAGAAGGGTG
GCCTTGGACAAAGATAGTCAAGCTAAATTTGATGTTAGTTTCTTCAAGAATGTGCGTGATGGTANNAATGGGGTTCTTGAGTCAGACCAGAGGTTGTGGGCAGATTCTTCTACTCAAAGT
GTGGTGCAAAATTATGCTGGGAATGTTANNAGAGGGTAACTGGGGTTGAGGTTTGACTTTGAATTTCCAAAGGCCATGATTAAGTTAAGTAGCATAGAGGTGAAGACTGGTACTGATGGA
GAGATCAGAGAAGTGTGTTCAAAATT

Retrieve as FASTA