Entry information : TsPrx04-1 (Thhalv10008244m / ThPrx04-1)
Entry ID 9761
Creation 2011-11-18 (Qiang Li)
Last sequence changes 2011-11-18 (Qiang Li)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2015-11-17 (Christophe Dunand)
Peroxidase information: TsPrx04-1 (Thhalv10008244m / ThPrx04-1)
Name (synonym) TsPrx04-1 (Thhalv10008244m / ThPrx04-1)
Class Class III peroxidase    [Orthogroup: Prx008]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Eutrema
Organism Thellungiella salsuginea (Eutrema salsugineum)    [TaxId: 72664 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value TsPrx04-1
start..stop
S start..stop
TsPrx04-2 639 0 1..316 1..316
BrPrx04-1Aa_other 607 0 1..316 1..317
BstrPrx77 603 0 1..317 1..317
AlyPrx04 598 0 1..316 1..316
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '9761' 'join(10481521..10481718,10481811..10482002,10482383..10482551,10482649..10483040)' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 10481521..10481718 196 N° 2 10481811..10482002 190 N° 3 10482383..10482551 167 N° 4 10482649..10483040 390
join(10481521..10481718,10481811..10482002,10482383..10482551,10482649..10483040 )


exon

Literature and cross-references TsPrx04-1 (Thhalv10008244m / ThPrx04-1)
DNA ref. Phytozome 12:   scaffold_5 (10481521..10483040)
Protein sequence: TsPrx04-1 (Thhalv10008244m / ThPrx04-1)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   316 (297)
PWM (Da):   %s   34328.17 (32120.0)  
PI (pH):   %s   8.08 (7.97) Peptide Signal:   %s   cut: 20 range:20-316
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAIFKILVLLLSLSCFCQAQLSSTFYDQRCPNALSTIRSSIRTAISRERRMAASLIRLHFHDCFVNGCDASVMLVATPTMESERDALANFQSARGFEVIDQAKSAVERVCPGVVSCADII
AVAARDASEYVGGPRYAVKVGRRDSTAAFRAIADSGDLPNFTASLDELSDLFLRKGLNTRDLVALSGAHTLGQAQCVTFKQRLYDNSSDIDAGFSSTRKRRCPVEGGDMTLAPLDQVTPN
SFDNNYYRNLMQKKGLLATDQVLFGTGASTDNIVSEYSRNPARFASDYAAAMIKMGDIQTLTGSAGQIRRICTAVN*

Retrieve as FASTA  
Remarks Complete sequence from genomic (3 introns). No EST.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCATCTTCAAGATTCTTGTGTTGTTGCTAAGCTTGTCTTGTTTCTGCCAAGCACAACTTTCTTCTACTTTCTACGACCAAAGATGTCCAAATGCTCTCTCAACTATCCGATCCTCA
ATCCGAACCGCCATCAGCCGCGAACGTAGAATGGCTGCTTCTCTCATCCGTCTCCATTTCCACGATTGCTTCGTAAAT
ATGTATGTCATTAACATTTTGATCTAACATGCGTGTGTGTTC
ATGGACCGCTCTAAAATTTGTATTTGGTTTTTTATATACTTTTTTTTTGTAGGGTTGTGATGCATCGGTCATGCTTGTGGCAACTCCTACCATGGAGAGTGAGAGAGATGCGTTAGCAAA
CTTTCAATCAGCGAGAGGATTTGAAGTTATTGATCAAGCCAAATCTGCTGTTGAGAGAGTCTGTCCTGGTGTCGTTTCTTGTGCTGATATCATTGCCGTTGCCGCTAGAGACGCTTCTGA
ATAC
ACGTAAGTATTTATCAGTATCTATAGCCATACGCATTGACATATGTCAGATATATTTACATGGTTAAATTTTATTTTTGATATTTGTAAGAAATAGATATTTCATTTTTAACATAA
TCTTATGTAAGTACTGAATGAATTGTTCATTCCATTTTGTGTTTGAATTTTGCATATACAACTTTTATTTTTACAAGTCTCCATGTTAAAACTCTAAAGTATTTTATTTGAGAAAAAAAG
AAACACTATCTATTATAACATTACCATCTAAACGTAAAGATAAAAGAAATTGAGGTCATACGATATGCATTATACATCAGCTTTTTCAATTTGTTTTCTCGTAGTTCTAATAATTCTTTA
ATATGTAAATTTGGTGTCATCAATAGGTCGGAGGTCCACGATACGCAGTAAAGGTTGGTCGGAGAGATTCCACCGCCGCGTTTAGAGCTATTGCAGACAGCGGCGATCTCCCCAACTTCA
CGGCAAGCCTCGACGAACTCTCTGATCTCTTCCTTCGAAAAGGTCTCAACACTAGAGACCTCGTCGCTCTCTCAG
AGGTCAGTCCCCAAAAGAAAAATTCTTATTAGTCGCTAATTTGTT
TTAATTACTATATTTTAAGAAATTTCTTGTGACACAAGCAACTTCTATTTGCAGGAGCTCACACCTTAGGGCAAGCTCAATGCGTCACGTTCAAGCAAAGGCTTTACGACAACTCGAGCG
ACATTGATGCCGGATTCTCTAGCACACGTAAGCGTCGCTGTCCGGTAGAAGGTGGAGATATGACCCTAGCACCTCTAGATCAAGTGACACCAAATTCGTTCGACAATAACTATTACAGAA
ACTTGATGCAGAAGAAAGGGCTTTTGGCGACCGATCAGGTTTTGTTCGGAACCGGGGCTTCTACAGACAATATTGTGTCGGAATATAGCAGAAACCCAGCTCGATTCGCGTCTGATTACG
CAGCTGCAATGATCAAGATGGGAGATATTCAGACACTCACTGGCTCAGCTGGACAAATCCGGAGGATCTGCACTGCTGTTAATTAA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCATCTTCAAGATTCTTGTGTTGTTGCTAAGCTTGTCTTGTTTCTGCCAAGCACAACTTTCTTCTACTTTCTACGACCAAAGATGTCCAAATGCTCTCTCAACTATCCGATCCTCA
ATCCGAACCGCCATCAGCCGCGAACGTAGAATGGCTGCTTCTCTCATCCGTCTCCATTTCCACGATTGCTTCGTAAAT
GGTTGTGATGCATCGGTCATGCTTGTGGCAACTCCTACCATG
GAGAGTGAGAGAGATGCGTTAGCAAACTTTCAATCAGCGAGAGGATTTGAAGTTATTGATCAAGCCAAATCTGCTGTTGAGAGAGTCTGTCCTGGTGTCGTTTCTTGTGCTGATATCATT
GCCGTTGCCGCTAGAGACGCTTCTGAATAC
GTCGGAGGTCCACGATACGCAGTAAAGGTTGGTCGGAGAGATTCCACCGCCGCGTTTAGAGCTATTGCAGACAGCGGCGATCTCCCCAAC
TTCACGGCAAGCCTCGACGAACTCTCTGATCTCTTCCTTCGAAAAGGTCTCAACACTAGAGACCTCGTCGCTCTCTCAG
GAGCTCACACCTTAGGGCAAGCTCAATGCGTCACGTTCAAG
CAAAGGCTTTACGACAACTCGAGCGACATTGATGCCGGATTCTCTAGCACACGTAAGCGTCGCTGTCCGGTAGAAGGTGGAGATATGACCCTAGCACCTCTAGATCAAGTGACACCAAAT
TCGTTCGACAATAACTATTACAGAAACTTGATGCAGAAGAAAGGGCTTTTGGCGACCGATCAGGTTTTGTTCGGAACCGGGGCTTCTACAGACAATATTGTGTCGGAATATAGCAGAAAC
CCAGCTCGATTCGCGTCTGATTACGCAGCTGCAATGATCAAGATGGGAGATATTCAGACACTCACTGGCTCAGCTGGACAAATCCGGAGGATCTGCACTGCTGTTAATTAA

Retrieve as FASTA