View Redoxidase 9763

Entry information : TsPrx06 (Thhalv10009658m)

Entry ID	9763
Creation	2011-11-18 (Qiang Li)
Last sequence changes	2011-11-18 (Qiang Li)
Sequence status	complete
Reviewer	Christophe Dunand
Last annotation changes	2015-11-24 (Christophe Dunand)

Peroxidase information: TsPrx06 (Thhalv10009658m)

Name (synonym)

TsPrx06 (Thhalv10009658m)

Class

Class III peroxidase [Orthogroup: Prx002]

Taxonomy

Eukaryota Viridiplantae Streptophyta Brassicaceae Eutrema

Organism

Thellungiella salsuginea (Eutrema salsugineum) [TaxId: 72664 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	TsPrx06 start..stop	S start..stop
AlyPrx06	608	0	1..328	1..326
AhalPrx53	607	0	1..329	1..327
BstrPrx79	605	0	1..329	1..327
NoffPrx06-1A	603	0	9..328	8..327

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	6880460..6881446	985
complement(join(6880460..6881446))

Literature and cross-references TsPrx06 (Thhalv10009658m)

DNA ref.	Phytozome 12: scaffold_5 (6881446..6880460)

Protein sequence: TsPrx06 (Thhalv10009658m)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	328 (307)
PWM (Da):	36552.19 (34113.9)
PI (pH):	7.39 (6.62)	Peptide Signal:	cut: 22 range:22-328

Sequence
Send to BLAST
Send to Peroxiscan

*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

MKSCGLRCLF ILLSFPFLLQ ANLSPDYYSK TCPEFDQTLV QIVTEKQIAA PTTAAGTLRL FFHDCMVDGC DASILVASTP RKTSERDADI NRSLPGDAFD LITRIKTAVE LKCPNVVSCS DILVGATRSL VSMVGGPKIN VKFGRKDSLV SDMNRVERKL ARPNMTMDHI ISIFESSDLT VQEMVALVGA HTIGFSHCKE FASRIFDGEN QSGSPEGMNP KYAAELRKLC ANYTKDEEMS
AFNDVFTPGK FDNMYYRNLK HGYGLLASDH AIAFDNRTRS LVDLYAANET AFFDAFAKAM VKVSEQKVKT EKHGEVRRRC DQYNDYKG*

Retrieve as FASTA

Remarks

Complete sequence from genomic (no intron). No EST.

DNA ►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

ATGAAATCTT GTGGGTTACG TTGTCTGTTT ATTCTCCTGT CGTTTCCATT TCTCCTCCAA GCCAACCTCT CGCCTGATTA TTACAGCAAA ACATGCCCTG AATTCGACCA AACCCTAGTC CAAATCGTCA CCGAGAAACA AATCGCTGCT CCAACAACAG CCGCCGGAAC ACTCCGTCTC TTTTTCCACG ACTGTATGGT CGACGGCTGC GACGCCTCGA TTCTCGTCGC TTCTACTCCC CGTAAAACCT CCGAACGCGA CGCCGACATC AACCGATCTC TCCCCGGAGA CGCATTCGAC CTAATCACTC GGATCAAAAC CGCCGTCGAG CTCAAATGCC CCAACGTCGT TTCATGCTCC GACATCCTCG TCGGAGCTAC GCGCAGCCTC GTCTCCATGG TCGGAGGTCC TAAAATCAAT GTCAAATTCG GTCGTAAAGA CAGTCTCGTC TCCGATATGA ATCGCGTCGA AAGAAAACTA GCTCGGCCTA ATATGACCAT GGATCACATC ATCTCGATCT TCGAGTCCAG TGACTTGACC GTACAAGAGA TGGTGGCTCT CGTCGGAGCA CACACGATCG GTTTCTCTCA CTGCAAAGAG TTCGCGAGCC GAATCTTCGA CGGCGAAAAC CAGTCCGGTT CTCCGGAAGG GATGAATCCG AAATACGCGG CGGAGCTGAG GAAGCTTTGC GCGAATTACA CAAAGGACGA AGAGATGTCT GCGTTTAATG ACGTTTTTAC CCCTGGGAAA TTCGACAACA TGTATTACAG GAACTTGAAG CACGGTTACG GGTTGCTTGC GTCGGATCAC GCGATCGCGT TTGATAACAG GACGCGATCG TTGGTGGATC TCTACGCGGC GAATGAAACG GCGTTCTTCG ACGCGTTTGC GAAGGCGATG GTGAAGGTTA GCGAGCAGAA GGTGAAGACG GAGAAGCATG GAGAGGTTCG AAGGCGGTGC
GATCAATACA ATGACTACAA GGGGTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

Retrieve as FASTA