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Entry information : SbPrx70 (Sobic.004G049800.1 [2.1] / Sb04g004250 [1.4])
Entry ID 979
Creation 2008-11-18 (Christophe Dunand)
Last sequence changes 2008-11-18 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbPrx70 (Sobic.004G049800.1 [2.1] / Sb04g004250 [1.4])
Name (synonym) SbPrx70 (Sobic.004G049800.1 [2.1] / Sb04g004250 [1.4])
Class Class III peroxidase    [Orthogroup: Prx147]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx70
start..stop		 S start..stop
ZmPrx27 591 0 14..352 1..342
SiPrx71 567 0 28..350 21..343
TaPrx129-1D 472 1.62e-168 15..350 5..343
TaPrx129-1A 471 2.85e-168 21..350 2..326
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 4050312..4050575 262 N° 2 4049992..4050183 190 N° 3 4049719..4049881 161 N° 4 4048295..4048734 438
complement(join(4048295..4048734,4049719..4049881,4049992..4050183,4050312..4050 575))


exon

Literature and cross-references SbPrx70 (Sobic.004G049800.1 [2.1] / Sb04g004250 [1.4])
Literature Cordonnier-Pratt,M.-M. et al., unpublished
DNA ref. Phytozome 12:   chromosome_4 (4050575..4048295)
Protein sequence: SbPrx70 (Sobic.004G049800.1 [2.1] / Sb04g004250 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   352
PWM (Da):   %s   37212.94 Transmb domain:   %s   i21-43o
PI (pH):   %s   8.4
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAVSTRRRHSSSRMVAVPAPVVLGVAMVVVVLASSATGASGQLRMGFYAESCPGVERMVGDFVRQHVRRVPTVAAALLRLHFHDCFVRGCDASVLLNSTAGSVAEKDAPPNLTLRGFDFV
DRVKTLVEEACPGVVSCADVLALAARDAVVAIGGPSWRVPTGRRDGTVSTMQEALNDIPKHTMTFQQLANLFASKGLGVRDLVWLSGAHTIGIAHCSSFADRLYGYPGAGAGNDTTDPSL
DATYAANLRRRKCRAASGGYAEDAVVEMDPGSHLTFDLGYYRALLKHRGLLRSDAALLTDAAARADVESVVGGAEEVYFQVFARSMARLATVQVKTGAEGEIRRNCAVVNGG

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 4, 3 introns)and 3 ESTs.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGTGAGCACCAGGAGGCGGCACAGCAGCAGCAGGATGGTGGCCGTGCCGGCGCCGGTGGTTCTTGGAGTGGCCATGGTCGTCGTCGTCCTGGCCAGCAGCGCGACCGGCGCGAGC
GGGCAGCTGAGGATGGGGTTCTACGCCGAGAGCTGCCCCGGCGTGGAGCGAATGGTGGGCGACTTCGTCCGGCAGCACGTCCGCCGCGTGCCCACCGTCGCCGCCGCGCTGCTCCGGCTG
CACTTCCACGACTGCTTCGTCAGGGTACGTGACTACGCGCGTTGTTGTGTCCATTGCACGGCGGCGTGCCGGTGCCAGCTGACTGCCAGTGCGCGCACTGACCGTGTGGGTGTGCATGAT
GTGCATGTGTTCCACTGTCGTCGTCCCGCCAGGGGGCTGCGACGCCTCCGTCCTGCTCAACTCCACCGCCGGCAGCGTGGCCGAGAAGGACGCGCCGCCGAACCTGACGCTGCGCGGCTT
CGACTTCGTCGACCGCGTCAAGACGCTCGTCGAGGAGGCCTGCCCAGGCGTCGTCTCCTGCGCCGACGTCCTCGCGCTCGCCGCCCGGGACGCGGTCGTCGCCATTGTGCGTGAGCTCAC
CATTCCACCACTAGTTTCTCTGGTGCCTGGACGATGGATCATCGACCATGCATGAGCTGACAATCCAAGTGCTCGATCGATCGGACTTGTTGGCAGGGGGTGGGCCGTCGTGGCGCGTGC
CGACGGGGAGGAGGGACGGCACGGTGTCGACCATGCAGGAGGCGCTCAACGACATCCCCAAGCACACCATGACCTTCCAGCAGCTGGCCAACCTGTTCGCCAGCAAAGGCCTCGGCGTCC
GTGACCTCGTCTGGCTCTCAGGTGCCCACCTCGATCTACATGACTAATCTCCTCTTCACATGCATGGCAGTAACAAATAAACGAAACATTTGTCACTACTACATTTGTATTTTTTACTCC
TTAAGTACATATCAGTAAAAAAGATTAGGGGGATTATTCCTGTAACTAGATCAAACGTGAATTTCACAAAAGTTCGATTGTCACAGAAAGCAGACTGGTGTGGTTCAGACTTCAGATAGG
CGTAGTAGGCCGGACACTGAGCTGAGATAGCCTGGTTCTGATTGCCCATTCCTTACATGTTGATTGGGCAACAACAGTACATGCAAAAGCAGCACGAATAATGGTTTGCTTTCGCTGCCC
TTCTTAAACCGGATCGCCAGATTCCTTGAGCGAAATGTTCCAAATTTTACTTTCAGCTCCGATCCACTCATGCCTGCTAGCTTCGTTCCTGTCCTCTCGATACGTCCGCATCAGATGCTC
CTTTCACTATATATTTCATAATATAGCTGAGCACTCACCATTCCTGATTCCTCTCAAATGAAATTCCTGAACTAAAGCTGTTTTTTTTTTTTGTGAGGAAGCCGGGAGGGAGGCCCCTAC
CTAAATTGTATTAAAAATGCAAACTGTACAAATGTAGGTGCAAAGCCACATAAGGCTCAGAGAGAAAAAAAAGAAGATAAAATACAAAAGGGAAGAATAAGAACAGAAAAGCAGCTGAAC
TAAAGCTGTTCTTGAATTTAGTTTTTTTTCTTACATAGAAAACAGTGCAGCCCGCCAAAATTGTGACTGTGCATAGGTCACTACATTAACTTGTCCATTTTTACTGTTTTTTCCTCCAAG
AAATCAAACTGTTCATCAGCATTTCAGCAACATGAAAATCAGCTGTAAAAATGAATAGAGACAAGTGCTCAAATCTTGCATGCAGTTCAGGCTGTTTTGTAGTCGTTGTACTCTCCGTCG
TCCACCATTTGTTTTCTGACATGTGGAATGCGACTGATCGAGCAGGCGCGCGCACACGATCGGCATCGCGCACTGCTCCTCCTTCGCCGACCGCCTCTACGGCTACCCCGGCGCCGGCGC
CGGCAACGACACGACGGACCCGTCCCTGGACGCGACCTACGCCGCCAACCTCCGCCGGCGCAAGTGCCGGGCGGCGAGCGGCGGGTACGCCGAGGACGCCGTGGTGGAGATGGACCCGGG
CAGCCACCTGACGTTCGACCTGGGCTACTACCGCGCGCTGCTCAAGCACAGGGGCCTGCTCCGCTCCGACGCCGCGCTGCTCACCGACGCGGCGGCGCGCGCCGACGTCGAGAGCGTCGT
GGGCGGCGCCGAGGAGGTCTACTTCCAGGTGTTCGCGCGGTCCATGGCCAGGCTCGCGACGGTGCAGGTCAAGACCGGAGCTGAGGGGGAGATCAGGAGGAACTGCGCCGTCGTGAACGG
CGGCTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGTGAGCACCAGGAGGCGGCACAGCAGCAGCAGGATGGTGGCCGTGCCGGCGCCGGTGGTTCTTGGAGTGGCCATGGTCGTCGTCGTCCTGGCCAGCAGCGCGACCGGCGCGAGC
GGGCAGCTGAGGATGGGGTTCTACGCCGAGAGCTGCCCCGGCGTGGAGCGAATGGTGGGCGACTTCGTCCGGCAGCACGTCCGCCGCGTGCCCACCGTCGCCGCCGCGCTGCTCCGGCTG
CACTTCCACGACTGCTTCGTCAGGGGCTGCGACGCCTCCGTCCTGCTCAACTCCACCGCCGGCAGCGTGGCCGAGAAGGACGCGCCGCCGAACCTGACGCTGCGCGGCTTCGACTTCGTC
GACCGCGTCAAGACGCTCGTCGAGGAGGCCTGCCCAGGCGTCGTCTCCTGCGCCGACGTCCTCGCGCTCGCCGCCCGGGACGCGGTCGTCGCCATTGGTGGGCCGTCGTGGCGCGTGCCG
ACGGGGAGGAGGGACGGCACGGTGTCGACCATGCAGGAGGCGCTCAACGACATCCCCAAGCACACCATGACCTTCCAGCAGCTGGCCAACCTGTTCGCCAGCAAAGGCCTCGGCGTCCGT
GACCTCGTCTGGCTCTCAGGCGCGCACACGATCGGCATCGCGCACTGCTCCTCCTTCGCCGACCGCCTCTACGGCTACCCCGGCGCCGGCGCCGGCAACGACACGACGGACCCGTCCCTG
GACGCGACCTACGCCGCCAACCTCCGCCGGCGCAAGTGCCGGGCGGCGAGCGGCGGGTACGCCGAGGACGCCGTGGTGGAGATGGACCCGGGCAGCCACCTGACGTTCGACCTGGGCTAC
TACCGCGCGCTGCTCAAGCACAGGGGCCTGCTCCGCTCCGACGCCGCGCTGCTCACCGACGCGGCGGCGCGCGCCGACGTCGAGAGCGTCGTGGGCGGCGCCGAGGAGGTCTACTTCCAG
GTGTTCGCGCGGTCCATGGCCAGGCTCGCGACGGTGCAGGTCAAGACCGGAGCTGAGGGGGAGATCAGGAGGAACTGCGCCGTCGTGAACGGCGGCTAG

Retrieve as FASTA