View Redoxidase 9791

Entry information : TsPrx12 (Thhalv10018753m)

Entry ID	9791
Creation	2011-11-18 (Qiang Li)
Last sequence changes	2011-11-21 (Qiang Li)
Sequence status	complete
Reviewer	Christophe Dunand
Last annotation changes	2015-11-12 (Christophe Dunand)

Peroxidase information: TsPrx12 (Thhalv10018753m)

Name (synonym)

TsPrx12 (Thhalv10018753m)

Class

Class III peroxidase [Orthogroup: Prx005]

Taxonomy

Eukaryota Viridiplantae Streptophyta Brassicaceae Eutrema

Organism

Thellungiella salsuginea (Eutrema salsugineum) [TaxId: 72664 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	TsPrx12 start..stop	S start..stop
ThPrx12	749	0	1..363	23..385
BrPrx12-1Ab_other	684	0	1..364	1..363
AhalPrx49	683	0	1..364	1..359
AlyPrx12	675	0	1..363	1..359

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	3943335..3943613	277	N° 2	3942039..3942233	193	N° 3	3941231..3941848	616
complement(join(3941231..3941848,3942039..3942233,3943335..3943613))

Literature and cross-references TsPrx12 (Thhalv10018753m)

Literature	Wong,C.E., Li,Y., Whitty,B.R., Diaz-Camino,C., Akhter,S.R., Brandle ,J.E., Golding,G.B., Weretilnyk,E.A., Moffatt,B.A. and Griffith,M. Expressed sequence tags from the Yukon ecotype of Thellungiella reveal that gene expression in response to cold, drought and salinity shows little overlap. Plant Mol. Biol. 58 (4), 561-574 (2005)
DNA ref.	Phytozome 12: scaffold_9 (3943613..3941231)
EST ref.	GenBank: DN776916.1 [5' end] DN773597.1 [3' end]

Protein sequence: TsPrx12 (Thhalv10018753m)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	363 (332)
PWM (Da):	39789.5 (36344.5)	Transmb domain:	i7-29o
PI (pH):	8.39 (8.21)	Peptide Signal:	cut: 32 range:32-363

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MAKAYSARVLTFLILISLMVVALNLLSTVEAQNKKKPRRGDVPLVKGLSWNFYQKACPKVEKIIRKELKKVFKRDIGLAAAILRIHFHDCFVQGCEASVLLAGSASGPGEQSSIPNLTLR
QAAFVVINNLRAIVHKRCGQVVSCSDILALAARDSVVLSGGPDYAVPLGRRDSLAFASQDTTLANLPPPFANASQLITDFESRNLNITDLVALSGGHTIGIAHCPSFTDRLYPNQDPTMN
KFFANSLKRTCPTANSSNTQVNDIRSPDVFDNKYYVDLMNRQGLFTSDQDLFVDKRTRGIVESFAIDEDLFFDHFTVAMIKMGQMSVLTGSQGEIRSNCSARNVDSFMSVLEAGIVEEAL
SMI*

Retrieve as FASTA

Remarks

Complete sequence fromm genomic and 1 EST.

Promoter►
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Send to cis Analysis

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

TGCTTTCAGC TAGATGGATT GAGTCTCAGG TATCATGTAT AAATTTTTAA CTCCACGCGT GCCTCTAAAT TTCATTCGTA CATGGTCCAG ATCAATTAAA ACCGTGAACT CATCATCCTT TAGAATGAAT GATGAAAATG ATTTTATTAA AATATAGATC ACTAAACTTT AAATCGAGTT CTACGTACTG CTAATTACAA TTCAATCTAA TAATTAGTAG TAAATTTTTC TAATTCATGT ACGAGTATCA AAGTCACTAA ATGATCAATG CCACTAATTC ATGTACTAGG CCCACTACTG TCTACGCCCT CCTATGGCCT TAGCAAAAAT TAGGCAGCAA GAGAGGTTGA AACCATGCTT TGAAATATAT ATTGTATTTT TTTCTTGTTT ATATATATGT ATATATTTTC TTAGTATAAA CTGTATATAC TATAGAAAAC CAACTCTTTT CGCCCAAATT TTTTTTCACA TAAGTTCATA CACATTCATG GAGACATACC AATTTATATC GAAATTTCTG GGTGTAACGC ATATCCAATT AATAATAGGA AAGAGAGAGC AGAGGAACGT GGCGAACACA TACTAAAAGA GTCTCAAGCA CATACACATG TCAGGTTCTG ACTTCTAAGA AACATACTTG TTTGATGTAC AATCATATGC TCACTTTGCA TTACATTTTT CAAACTTCAC ACTCTTTAAC TCTTATCCCA CCATTTCTGA AAAGTCACAA TCTTCATAAA CCACTTACGA TCCACTGACT CAACGAATAC GCCAACTCAA GCGCGCGTGA CTTTCTTGAT TCTACATGGC TTGAGTGTTT CTTCATAAAG CCACATCGAC GCTTACTTTC TTTCTAATTA AATTGGCTCA AATGTGTGTT TTCTTCGCCT CTCGGACCTA TAAAACTAAG TTATTAAGTG AGCACAACTT GGTTGAAATG TTAAATAGTT CGTGCTATAT TTTTGTCGCA ATTACAAAAA AAAAATCTTA ATTAAGAAAT TAATGCTAGT AGACTAGTGT ACAGTCTTTT TTCAACTAGA GATTACCGAG TGTATAATCT TTAGAGTTTT TTTTTTCAAA TTCAGTCTAA AAATACTGAA GCATTACTTG ATGTAACAAT GGTTTTTTAT TGAATGAATT TTATATTAAA TTAAAAAAAT ACTCTTAAAC TAACATGTTT AGTTTCTACA AAATAGCACG TAGGATTCTT CGAATTTGGG TTCAGTCTCA CAGAAACAAT ACCCTTCTCT AGTTTAAAAA AAAAAAAAAA AACAATACTC TTCTAAACAT TTTCAACTGG TTACATACAC AAAAAGTTAA ACATTTTCAC GCGACTATTT AGTAGTATAA TGAAAATTTT CTATTTTTGA GATCAGTCTA TACATTTAAA GTTTGTAAAC ATTTTCATTT GTCAATAAGT TCAATTTGAT ATACTAGAAA GAATCTTGGT TAATAGGTAC TGGATCAATG TCACGAATGT GAATGCCAGT GGAATAAATT AGTTACGGTT CGCACATATT TATCTGCTTT AATCTTTTTT GGAGATAAAT GCCTGCTTTA ATTTTTTTTG GAGATAAATG CCTGCTTTAA TCTTTTTTGG AGATAAATGC CTGCTTTAAT CTTTGATCCC AAAACTGTAA AAAGTCTATA ATTTTCTTGT CATATGGAAA GAGTTTTTTT TGGTTAACAA ATAATTGCTA CGTTTATTAA CCAAATCCCG TTCCTACGTA CCAAACGCAA AACTTCCACT TATATTTTTA TTTTTCAAAT AAATAAACGA CTTTCTATTC ATTAAATAAA AATAAAAATA AGACTGTCAT ATTCTGGTTT TACTAATTAA CATATATATT ATAAAAAAAA ACAGAAAAGG ACCACATTTG CCTATAAAAA CGAAGTCCTT CTATGACTAT ATTCTAAGAA
CAACAAGAAG CACAGAAAGA GAAAAAGCTT TGTAATTGAA AGACCAACAA GATCAGAAAA A

Retrieve as FASTA

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCTAAGGCTTATTCAGCACGTGTCCTCACGTTTCTGATATTGATCTCGTTAATGGTGGTGGCACTGAATCTTCTGTCAACGGTAGAAGCACAGAATAAGAAAAAGCCGAGGAGAGGC
GATGTTCCTCTAGTGAAAGGTCTCTCATGGAACTTTTACCAGAAAGCATGTCCCAAAGTCGAAAAAATCATCAGAAAGGAGCTCAAGAAAGTCTTCAAGAGGGATATTGGTTTAGCCGCA
GCCATCCTCCGTATACATTTCCATGACTGCTTCGTTCAGGTCTATCATCTTTTTTCCTTCTTTTCTCTTTATTCTTTTTCGGGTATCAAAATCTAGAGAGAAACATAAATTATTGATGTT
CTCTAAACCTAATCTAATCACTTCTACGTATGTGATTACATTTTTTATTTAGTTTGTTAATTAAGATAAGAAACCATCATTTAGCAAAAAAAAAAAAAAGATAAGAAACCATATGCAAGT
ATACCCACACAAATATAAAAGGAACCGCGTCGTTTGTCCGAAAAAAAGGAGAAAAATGAATTTTGTAAAATCATAAACAGCCTAGTGGCCCTAGACTATTATTTTACTTTAAAATGTTGT
CACGTGCTGAAATGATCCCGACCGAAATAGCCTAAAGAAAAATCATAACATCGCCTTGAAAGTCTTACGAACATAGAAATAAGGTTGTCAACTTGTCCACTTCTCTCTTCTCTTCTTTTT
AGAAGAAAGCTTTTCTTAGTGTAAAAGTGTAAAAAGTATAAACACTAGTTAAATGACCAAAAGATATTATCGAATTGTATTGTTGAACTAGATTACACCCTTCTTTTCTAATAGTATAGA
TGTACAAACACATGCACTAGGATAGGCTTGAATACAGTAGGGCAGTCGCATTAAATACTATTTACCCGCTTTTTGTGGGTTAGTTGAGTCTCTTTTAATGAAGGTCGTCAATATCTAAAA
TAAATGAATTTCGACCCAAGGGTTCAAAACATAAATAAAACGAATAATAGAGATGTCCCAATATGTTTGCCAAAAAAAAAAAAAAAACGAATAATAGAGATGTCCCAATTATTCTTTTCG
TTTGGGGTTAAAATATAACAGAGGATGGATAGTATACCCTTATTAATCTATTAGTATAAAATATGCATGTACCTATTTAGAATAATTATGTATCCAATTTATTAAACAAAATATTAGATA
CAGTATTCCCCTTCATACTACTGTCAGGTATTTTTTAGTGTTACTTGCAACACCTCTTACTGAATCGTGGCATAATCTGATCAGAAACATAACTATCGAGGAAAATCTTGAATATAGTGT
TTCATTTATTGCTTTCATTTTGAGAATAAACGACAAATAATAATAAAAATAAAAAAATAGGGGGATGTGAAGCATCAGTGCTGCTAGCTGGATCAGCGAGTGGACCAGGAGAACAATCAT
CGATCCCGAATCTGACACTACGTCAAGCCGCCTTTGTCGTCATCAATAACCTCCGTGCTATCGTCCACAAGCGTTGCGGTCAAGTCGTCTCTTGCTCTGACATCCTCGCTCTAGCCGCTC
GTGACTCCGTCGTCCTTGTAAACCAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAGTCAAAACTCTATTTATGTCTTTTTATACGTTACGCACATTTTCATATTTATTATAT
CTTGGAAAAATTACGGCAACTTTAGTTTAAAGTATAAACCAATACGATATATTATAATTGATATATTTTTTTTTTTTACCAATGTAGTCTCAGGAGGGCCAGACTATGCTGTGCCACTTG
GCCGACGAGACTCACTAGCGTTCGCAAGCCAGGACACGACGTTAGCTAACTTACCGCCACCATTCGCTAACGCGAGCCAGCTCATCACCGACTTTGAAAGTAGAAACCTCAACATCACCG
ACTTAGTTGCGCTTTCCGGTGGTCACACCATCGGAATTGCGCATTGTCCGTCTTTTACGGACCGGCTCTACCCGAACCAAGACCCAACCATGAACAAGTTCTTCGCCAACAGCCTCAAAC
GCACGTGCCCCACAGCGAACTCAAGCAACACGCAAGTGAACGACATAAGGAGCCCTGACGTGTTCGACAACAAGTACTATGTTGATCTCATGAACCGACAAGGGCTTTTCACGTCCGACC
AGGACCTGTTCGTGGACAAGAGGACACGTGGTATTGTGGAGAGCTTTGCGATCGATGAGGATCTGTTTTTTGATCATTTCACGGTGGCGATGATCAAGATGGGTCAGATGAGTGTCTTGA
CGGGGTCACAAGGAGAGATTCGCTCAAACTGCTCAGCAAGAAACGTTGATAGTTTCATGTCTGTTTTGGAAGCAGGAATAGTCGAGGAAGCTCTTTCCATGATCTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA