RedOxiBase: View Perox 9808

Entry information : TsAPx05 (Thhalv10028759m)

Entry ID	9808
Creation	2011-11-18 (Qiang Li)
Last sequence changes	2011-11-21 (Qiang Li)
Sequence status	complete
Reviewer	Christophe Dunand
Last annotation changes	2015-12-31 (Christophe Dunand)

Peroxidase information: TsAPx05 (Thhalv10028759m)

Name (synonym)

TsAPx05 (Thhalv10028759m)

Class

Ascorbate peroxidase [Orthogroup: APx002]

Taxonomy

Eukaryota Viridiplantae Streptophyta Brassicaceae Eutrema

Organism

Thellungiella salsuginea (Eutrema salsugineum) [TaxId: 72664 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	TsAPx05 start..stop	S start..stop
BnAPx04-1Aa_other	637	0	1..360	1..354
BoAPx03_other	615	0	1..360	1..351
NoffAPx05-1A	579	0	1..360	1..366
AlyAPx05	577	0	1..360	1..370

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	14513396..14513590	195	N° 2	14513673..14513822	150	N° 3	14514601..14514721	121	N° 4	14514803..14514903	101
N° 5	14514966..14515053	88	N° 6	14515185..14515252	68	N° 7	14515329..14515415	87	N° 8	14515533..14515607	75
N° 9	14515699..14515776	78	N° 10	14515868..14515972	105	N° 11	14516200..14516214	15
join(14513396..14513590,14513673..14513822,14514601..14514721,14514803..14514903 ,14514966..14515053,14515185..14515252,14515329..14515415,14515533..14515607,145 15699..14515776,14515868..14515972,14516200..14516214)

Literature and cross-references TsAPx05 (Thhalv10028759m)

DNA ref.	Phytozome 12: scaffold_3 (14513396..14516214)

Protein sequence: TsAPx05 (Thhalv10028759m)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	360
PWM (Da):	39552.9
PI (pH):	7.24

Sequence 402
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MAERVSLTLNTNTDTNTMSSLRTQISATRLLCSSSRSRLALSASSSPSSLSFTRSLVSSPLLSQIKRDQVALVNRSFSSSSATTKCTSATDPEQLKSAREDIKELLNTKFCHPILVRLGWHDAGTYNKNIKEWPQRGGANGSLRYEIELKHAANAGLVNALNLIQHIKEMYSGISYADLFQLASATAIEEAGGPKIPMKYGRVDTSSPHECPEEGRLPDAGPPSPANHLREVFYRMGLDDKDIVALSGAHTLGRSRPERSGWGKPETKYTKEGPGAPGGQSWTPEWLKFDNSYFKEIKEKRDEDLLVLPTDAAIFEDPSFKVYAEKYAADQDAFFNDYAESHAKLSNVGAKFNPPEGITI*

Retrieve as FASTA

Remarks

Complete sequence from genomic. No EST.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCCGAGCGTGTGTCTCTCACACTCAACACCAACACCGACACCAACACCATGTCTTCTCTTCGCACTCAAATCTCTGCTACTCGTCTCCTCTGCTCTTCCTCCAGATCTAGACTCGCT
CTTTCCGCTTCATCTTCACCTTCGTCTCTCTCATTCACCAGATCTCTCGTCTCTTCTCCGCTTCTCTCTCAGATAGTCTCTCCCTCCCTCCCTCTCTCTCCCGCTAATCTTCATTTCTCT
TTTTGTTGTTATTGATTTTTTTTTTCGGATTTTCCAGAAGAGAGATCAAGTTGCGTTGGTGAATCGGAGCTTTAGCTCGTCTTCCGCAACTACTAAATGTACATCAGCTACGGATCCTGA
ACAATTGAAGAGTGCTAGAGAAGATATCAAAGAGCTTCTCAACACCAAGTTCTGCCATCCAATTTTGGTTGGTTTTCTCTTCTATTGTCCTCAAGATATCGCTATTTTATCATTTATACA
GTATAAGGAATTACGATAAACACAGTGAAGCTGAAACGTTTTTGGGACAAAGCTAATTAATATTGTCCGTTGACTCGAGGTTATTTGTTAAGCTGTTCTCTGATTCCTACTTCTCACAAT
CCTTTAAACATCATACGGAGTTATCGTGTTGAAGGTGTTCTTTCCTGAATTCGCCATTACTCCCCAGTTTCGAGAGAAGAAAGCAAGGCTTTAGAACGGAATGTGTGCTATAGGAATCTA
GTTTTCTCCTTCATTAGCACAGAATGCTCGCTATAGGAACCTAGTTTTCTCTTTTACGAAATGCTCGAGAAAGGAATCTAGTGTTCTCCTTCATTAGCACAGAATGCTTGCTATAGGAAT
CTAGTTTTCTCTATTATGGAATGCTTGCGAAAGGAATATAGTTTTCTCCTTCATTAGCACGGAATGCTCGCGATAGGAATCTAGTTTTCTATTTTGTTTGCACAGAATGCATGCTACAGG
AATTTTATTTGCACAGAATGCTTGCTACAGGAATCTAGTTTTCTATTTTATTAGCACAGAATGCTTGCTACAGGAAACTAGTTTTCTCTTTTATGGAATGCTCGCGATTGGGAATCTAGT
TCTCTCTTTTATTAGCACTTTTGTATTTTATTGGCACAGAATTGCTATGGTTTGTTGTTGTATTTTTTTTTATCTGAATACTTTTTAAATATTGTTTTGCTGCATATTATGTTTGTGTAT
CACAGGTTCGTTTAGGGTGGCATGATGCTGGCACGTACAACAAGAACATCAAGGAGTGGCCTCAGAGAGGTGGAGCTAATGGGAGTCTGAGATACGAGATTGAGCTTAAGCATGCTGCTA
ATGCCGGTATCATTTACATACCATAGGAGTGGCTTATTTTTACTTCTTTGTGACCATGTTTAATCATAGGCTTGTTGTTGCTTTCAGGTCTTGTGAATGCTTTAAACCTGATTCAGCACA
TCAAAGAAATGTACTCTGGGATCTCGTATGCTGACCTATTCCAATTAGCCAGTGCTACTGCTATAGAGGTAAATTCTAGTATTACTTAAACTGGTCGTGAAAATGTTTACTAAACTTTCG
GAAAATTTAGGAAGCCGGAGGACCAAAAATACCTATGAAATATGGAAGAGTTGATACCTCCAGTCCTCATGAATGTCCTGAAGAAGGAAGGCTCCCAGGTAAGCTTCTTATTTATGGTGT
TCGCCTCTGCTTTGAATCACTAATCTTTGCGGATGTCTTTTGGTTACATAATTTTATCAACATTTTACTAATTGCAAATATCATATGTTTCCTCATATTTGTTCTATAGACGCTGGTCCT
CCTTCACCCGCTAATCATCTCAGAGAAGTTTTTTACAGAATGGGACTCGATGACAAGGTAATTGCTGTTAAATATTCATAACTATGGAAGATCAATGAGTAAAAGATCAGTATCGAAAGA
TTTTGAACTGCAGGACATAGTTGCATTATCTGGTGCCCACACCTTAGGAAGATCTAGGCCAGAACGTAGTGGTTGGGGGAAGCCAGAGACGAAGTACACGGTATTATTTCCTGTCCAGTT
CTATAACGTATTGTTGATAAAAGTTGTCATTTTTGGGACTGGAAAAAGTAAATGGAATACGATTTTCTAGCTCTTACTATGTGTTTTTGCATTATAGAAAGAGGGACCGGGCGCACCAGG
AGGACAGTCATGGACACCAGAGTGGCTGAAGTTTGACAACTCTTACTTCAAAGTTGGTTCATTACATAACTCTTTCTTCACATTTAGAAGTGAAAGTTTTCCTTTTTGTCCCTCGATGTC
TATTAATTTAATTGTTATAACAGGAAATCAAGGAAAAGAGAGATGAAGATCTCCTAGTCCTACCCACTGACGCTGCCATCTTTGAAGATCCTTCTTTCAAGGTAAAAAACAAACAATAAA
GTTGAAACATATGAATACGAAGGAACTTGCCGAGTCTTTGTCGTAAAAACTGAAACCGTGATGTAATTGCAGGTGTACGCTGAGAAGTATGCTGCAGATCAGGATGCATTCTTTAATGAT
TACGCTGAATCCCATGCAAAGCTCAGCAATGTTGGAGCAAAATTCAACCCTCCCGAGGTTTGCAATTCTTATATTTTGTTATGTTTATACTATATAGCATCAAAGCCATTATCATTGTCC
AGTGCTTGTGAAAGTAGGAAGTCGTGTTCGATCAAAAAGACGCGCTACATCAAAATTGCGATGAATTTAGAACCATGTTATCTAAATAGATAGATATCATTTTTTTTTTTTTGGCACTTG
AGAGTTTCCATTGATGAGTGAATAAATCTTAATCTTTTTTTTAGGGTATCACTATCTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA