RedOxiBase: View Perox 981

Entry information : SbRboh04 (Sobic.003G175000.1[2.1] / Sb03g022070[1.4])

Entry ID	981
Creation	2008-11-18 (Christophe Dunand)
Last sequence changes	2015-12-09 (Catherine Mathe)
Sequence status	complete
Reviewer	Christophe Dunand
Last annotation changes	2015-12-15 (Christophe Dunand)

Peroxidase information: SbRboh04 (Sobic.003G175000.1[2.1] / Sb03g022070[1.4])

Name (synonym)

SbRboh04 (Sobic.003G175000.1[2.1] / Sb03g022070[1.4])

Class

Respiratory burst oxidase homolog [Orthogroup: Rboh003]

Taxonomy

Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum

Organism

Sorghum bicolor [TaxId: 4558 ]

Cellular localisation

N/D

Tissue types

Leaves
Seedlings

Inducers

Colletotrichum inoculation
Heat shock stress
Pathogen interaction

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	SbRboh04 start..stop	S start..stop
ZmRboh15	1574	0	1..827	1..821
ZmRboh09	1570	0	1..827	1..822
OsRboh04	1443	0	4..827	2..819
BdiRboh09	1436	0	22..827	28..835

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	42498065..42498389	325	N° 2	42498613..42498775	163	N° 3	42498857..42498905	49	N° 4	42499180..42499293	114
N° 5	42499402..42499824	423	N° 6	42499920..42500306	387	N° 7	42500413..42500508	96	N° 8	42500637..42500752	116
N° 9	42500853..42500955	103	N° 10	42501046..42501134	89	N° 11	42501377..42501527	151	N° 12	42501604..42501753	150
N° 13	42501869..42501997	129	N° 14	42502108..42502186	79	N° 15	42502315..42502424	110
join(42498065..42498389,42498613..42498775,42498857..42498905,42499180..42499293 ,42499402..42499824,42499920..42500306,42500413..42500508,42500637..42500752,425 00853..42500955,42501046..42501134,42501377..42501527,42501604..42501753,4250186 9..42501997,42502108..42502186,42502315..42502424)

Literature and cross-references SbRboh04 (Sobic.003G175000.1[2.1] / Sb03g022070[1.4])

Literature	Cordonnier-Pratt,M.-M. et al., unpublished
DNA ref.	Phytozome 12: chromosome_3 (42498065..42502424)
Cluster/Prediction ref.	UniGene: Sbi.1848 [3' end]

Protein sequence: SbRboh04 (Sobic.003G175000.1[2.1] / Sb03g022070[1.4])

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	827
PWM (Da):	93445.91	Transmb domain:	o276-295i408-430o457-479i644-661o
PI (pH):	9.76

Sequence 1184
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MASSAGYAGGDTGGLGDGEPPPPVPPQMRKQPSRIASGMRRLASKVSSAVPEMRGHKHTHSGAQSGLRGLRFLDKTSAGKDGWKTVEKRFDEMSTDGRLQRENFAKCIGMADSKEFASEVFVALSRRRHINPDDGVTKEQLKEFWEEMTDQNFDSRLRIFFDMCDKNGDGKLTEDEVKIMVLSASANKLAKLKKHAGTYASLIMEELDPDHRGYIEIWQLETLLRGMVSASGPPDKMNMASQSLTRTMVPSSHRSPLQRRMNMAVDFVHENWKRIWVISLWGALNIALFVFKFIQYRRRAVFEVMGYCVCIAKGAAETLKLNMALILLPVCRNTLTRLRSTALSKVVPFDDNINFHKVIALTIAIGAATHTLSHVLCDFPRLVSCPKDKFMEKLGPFFNYVQPTWPILLTSIPGWTGILLILIMSFSFTLATHSFRRSVVKLPSPLHHLAGFNAFWYAHHLLVIAYVLLVMHSYFIFLTKQWYKRTTWMYLAVPVIFYASERSIRKIRERSYRVSIIKAAIYPGNVLSIYMKKPPSFKYKSGMYLFVKCPDVSPFEWHPFSITSAPGDDYLSVHIRTLGDWTSELRNLFGACEAEVTSKKATLARLETTVVAHGLAEDTRFPKVFIDGPYGAPAQNYRKYDILLLIGLGIGATPFISILKDLLNNIKSNEMESTHDTELGCSFKTNGPGRAYFYWVTREQGSFEWFKSVMNEVAESDRDDVIEMHNYLTSVYEEGDARSALIAMVQSLQHAKNGVDIVSGSKIRTHFARPNWRKVFSDLASAHKNSRIGVFYCGSPTLTKTLRDLSIEFSSTTTTRFHFHKENF

Retrieve as FASTA

Remarks

Complete sequence from genomic (chromo 3, 14 introns) and 3 ESTs.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCATCGTCGGCGGGGTACGCCGGTGGCGACACGGGAGGTCTGGGCGACGGGGAGCCCCCGCCCCCGGTGCCGCCGCAGATGAGGAAGCAGCCGTCGCGGATCGCGTCGGGGATGCGT
CGGCTGGCGTCGAAGGTGTCGTCGGCGGTGCCAGAGATGCGGGGCCACAAGCATACACACTCGGGCGCGCAGTCGGGCTTGCGCGGGCTGCGCTTCCTCGACAAGACCTCTGCCGGCAAG
GACGGCTGGAAGACCGTCGAGAAGCGGTTCGACGAGATGAGCACCGACGGCCGGCTGCAGAGGGAGAACTTCGCCAAGTGCATCGGTGAGTCTTGCTGAGACCTGTCCCTGTCACGGGCT
CACGGCTCGTCGTCTCGGTGATGTGATATATATGATCTGTCTATCCTGTAGAATGAGAACGACGATGCTAGGTTTTCTTTATGAAAGACATATGCATGTAAATTTGTTGAGAAAAAGTTG
ATCTATTTTGTGCTGGATTGGATGTATGATTACCTGATGCTCCGCTATATATAATCTGCGTCTTAAAGGTATGGCTGATTCAAAGGAGTTTGCAAGCGAGGTATTTGTGGCATTGTCTAG
GAGAAGACACATCAATCCGGACGACGGTGTAACAAAAGAACAACTAAAGGAGTTCTGGGAGGAGATGACAGACCAGAACTTTGATTCCCGGCTACGCATTTTCTTTGACATGTAAACCTG
ACCTCCAGTTCCCTTCGTTTCCATACTGAAATACGGATTGCTTTCGTCTTGACGAGATGTGCTTGCAACCAGGTGTGACAAGAACGGTGATGGTAAGCTGACAGAAGATGAGGTCAAGGA
GGTTAGCTTCTAGTGTTCGAACAAGTAGTTATGGCAGATGTTCTGCCAAGTGTTAACTTGTACTCCCTCCGTCCCAGTATATAAGGCGCAACTACCTCTGGTTCAAAGACCAAGAACGCA
TTTAATTCTCTCTCAGCACTAGTACTACTACATTAATGTTTGTGAGAGAGCACGCCTTATATTATAGGACATGAATAAAAAGTGGTTACGCCTTATATACTAGGACGGAGGGAGTATAAG
TGTAAAATTTCTATTTCACGATCATTTGTGTGCAGATCATGGTGCTAAGTGCCTCAGCAAACAAGCTTGCCAAACTGAAGAAACATGCTGGAACCTACGCCTCTCTGATCATGGAGGAGC
TGGACCCTGATCACCGCGGCTACATTGAGGTGCACGATCCCGGACATCTATCGAAACCCTTTATTAATTTGCTTCTCTCAGACAGTCAGTCAGCGACAGAGCAGCAGCATAGAGTACTGA
CAGAAAACAGAAAACAGATTTGGCAGCTGGAGACCCTGCTTCGGGGGATGGTGTCGGCCTCAGGGCCGCCGGACAAGATGAACATGGCGTCCCAATCTCTGACGAGGACGATGGTGCCTT
CCAGCCACCGGAGCCCACTGCAGCGGCGCATGAACATGGCTGTGGACTTCGTCCATGAGAACTGGAAGAGGATATGGGTGATCTCCCTCTGGGGCGCCCTCAACATCGCCCTCTTCGTAT
TCAAGTTCATCCAGTACCGGAGGCGCGCGGTGTTCGAGGTGATGGGCTACTGCGTCTGCATCGCCAAGGGCGCCGCCGAGACCCTCAAGCTCAACATGGCGCTCATACTGCTGCCGGTGT
GCCGGAACACGCTCACAAGGCTGCGGTCCACCGCGCTCAGCAAGGTCGTGCCGTTCGACGACAACATAAACTTCCACAAGGTACGGTGCTGAGCTTGCCACACACAATGTTCGCAATAAA
TGCATCTATCTGGCTGGCATGTTCGTTCGCAATGACATTGTCCATCATAATGTAGGTCATCGCGCTTACAATCGCCATAGGAGCTGCAACCCATACGCTTTCACACGTCCTCTGCGACTT
CCCCAGGCTGGTGTCGTGCCCCAAGGACAAGTTCATGGAGAAGCTGGGGCCCTTCTTCAACTACGTTCAGCCAACATGGCCGATTCTGCTGACGAGCATCCCGGGATGGACCGGGATCCT
CCTCATCCTCATAATGTCCTTCTCCTTCACGCTCGCCACGCACTCCTTCCGGAGGAGCGTCGTGAAGCTGCCGTCACCGCTGCACCACCTGGCCGGCTTCAACGCCTTCTGGTATGCCCA
CCACCTGCTGGTGATCGCCTATGTCCTCCTGGTGATGCACTCATACTTCATATTCCTCACCAAGCAGTGGTACAAGAGAACGGTACGTATTATTTTTGTTCAGTATTATTTGATATATAT
ATATATATATATATGTGTGACCAACAAGCTTGAATTGGAATCCCAATTTAATTTGCTTGCCTTTTCAGACATGGATGTACTTGGCAGTCCCTGTCATCTTCTATGCCTCTGAGAGAAGTA
TCAGAAAAATTCGTGAGAGAAGCTATCGCGTGAGCATCATAAAGGTAAAGTGATATATATGGTCCCTTTTCAGTTTGTTTGCTGTCTTAATATAAATAAATTTCTCCTTATATTACTTCT
GCAAGCGGACTTCTATTATTAATTTATATATATATATTTATGTGTCACACAGGCAGCAATTTACCCTGGAAACGTGCTCTCAATTTACATGAAGAAGCCACCAAGCTTCAAGTACAAAAG
TGGGATGTACCTGTTTGTAAAATGCCCAGACGTTTCACCTTTTGAATGGTACCAAGGCCCGCAGCATTGTCATTTTCAAGTCAGCATGATGACACTCCTAAAGAACTAAACTGTCCTAAT
AAGATTCGTCCATATCTCTGCAATGCAGGCACCCCTTCTCTATCACTTCGGCTCCTGGAGATGACTACTTGAGCGTTCATATCCGTACATTAGGTGATTGGACATCAGAACTCAGGAATC
TATTTGGGAAGGTCAGTTGACCGAGCACTTCAGAAAGGGGAAAAAAATCTGGAGCCTATTTCCTCATAGTAAGTTTGACATGAAAAATATGTTTCATGCAGGCTTGTGAAGCAGAAGTAA
CTTCTAAGAAGGCTACACTAGCTAGACTTGAAACAACTGTTGTGGCACATGGTCTGGCAGAGGACACTAGGTGATTGATTGCCTCATCTGTTTCATATATATGCTGTCTGGCTGTAGAAT
GTTTTCCTGAGTACATTTGGTAACACTACAACACTACGGTGAGAGAGTTATCACAAAGTGGCACTTTAATCAACACTCAACAGGTTGACAAGGCTTTAATTTGACTGGGAAGTTTGTCAT
AAGACGTCACCTATTTTCTTTTTTAAAAAAGCTATATGCTTAGTTCAATCTGACTTGGCTTTATTCATTTAGGTTTCCTAAAGTCTTCATAGACGGCCCTTATGGTGCACCGGCTCAAAA
CTACCGGAAATATGACATTCTTTTGCTTATCGGGCTCGGGATTGGTGCAACTCCTTTCATCAGCATACTGAAGGATCTCCTCAACAACATAAAGTCCAACCAGGTAAAACTGTGCTGAGC
TCTTGCAAATCTTTTCCAAATGGACAGCAAAAATGTTCAGTTCAGTTGCATTGAAACAGGAGATGGAGAGCACGCATGACACGGAGTTAGGTTGCAGCTTCAAGACGAATGGGCCAGGAA
GAGCCTACTTCTACTGGGTTACCAGAGAGCAAGGCTCCTTCGAGTGGTTCAAAAGTGTCATGAACGAAGTTGCCGAGAGTGATCGTGATGTACTTACTGATCTGATGCTCACAACTAATT
AATACATCCCTCCATTCCTAACTGGCTAATTATTACCAGAAAATTCAGAGTGATACATCCTCCTCGTTCTATCTATGCATACAGGATGTGATAGAGATGCACAATTACCTGACCAGCGTG
TACGAAGAAGGCGACGCGAGGTCAGCCCTGATTGCCATGGTCCAGTCACTTCAACATGCCAAGAACGGCGTGGATATTGTCTCAGGCAGCAAGGTGAAAGAAAGAAACAAGCATCTCCTT
TCATTTCCTCTGTCTCTCTTATCTGCACAAAATTCAGATATGCTGTACCTGTTTCCAGTTCTGAGTGACCTTTGGATTTGCAGATTCGAACGCATTTTGCAAGGCCAAACTGGAGAAAAG
TCTTCTCTGATCTGGCCAGTGCTCACAAGAACTCACGGATAGGTGAGTTTAATATATGATACTAAAATCAGAGAACCCACCTTGTTTTGATGATGAAGAAGATAAGAAAATCGACCGACG
TACATAGCTAATGCACAAATATTTATTAAGAAATTGATCTTGGCACGCAGGTGTCTTCTACTGTGGATCTCCAACACTTACGAAGACCCTAAGAGATCTTTCAATAGAGTTCAGCAGTAC
CACGACGACCCGATTCCATTTCCACAAAGAGAATTTCTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA