Entry information : SbRboh04 (Sobic.003G175000.1[2.1] / Sb03g022070[1.4])
Entry ID 981
Creation 2008-11-18 (Christophe Dunand)
Last sequence changes 2015-12-09 (Catherine Mathe)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2015-12-15 (Christophe Dunand)
Peroxidase information: SbRboh04 (Sobic.003G175000.1[2.1] / Sb03g022070[1.4])
Name (synonym) SbRboh04 (Sobic.003G175000.1[2.1] / Sb03g022070[1.4])
Class Respiratory burst oxidase homolog    [Orthogroup: Rboh002]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue types Leaves
Seedlings
Inducers Colletotrichum inoculation
Heat shock stress
Pathogen interaction
Repressor N/D
Best BLASTp hits
Perox score E-value SbRboh04
start..stop
S start..stop
ZmRboh15 1574 0 1..827 1..821
ZmRboh09 1570 0 1..827 1..822
OsRboh04 1443 0 4..827 2..819
BdiRboh09 1436 0 22..827 28..835
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 42498065..42498389 325 N° 2 42498613..42498775 163 N° 3 42498857..42498905 49 N° 4 42499180..42499293 114
N° 5 42499402..42499824 423 N° 6 42499920..42500306 387 N° 7 42500413..42500508 96 N° 8 42500637..42500752 116
N° 9 42500853..42500955 103 N° 10 42501046..42501134 89 N° 11 42501377..42501527 151 N° 12 42501604..42501753 150
N° 13 42501869..42501997 129 N° 14 42502108..42502186 79 N° 15 42502315..42502424 110  
join(42498065..42498389,42498613..42498775,42498857..42498905,42499180..42499293 ,42499402..42499824,42499920..42500306,42500413..42500508,42500637..42500752,425 00853..42500955,42501046..42501134,42501377..42501527,42501604..42501753,4250186 9..42501997,42502108..42502186,42502315..42502424)


exon

Literature and cross-references SbRboh04 (Sobic.003G175000.1[2.1] / Sb03g022070[1.4])
Literature Cordonnier-Pratt,M.-M. et al., unpublished
DNA ref. Phytozome 12:   chromosome_3 (42498065..42502424)
Cluster/Prediction ref. UniGene:   Sbi.1848 [3' end]
Protein sequence: SbRboh04 (Sobic.003G175000.1[2.1] / Sb03g022070[1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   827
PWM (Da):   %s   93445.91 Transmb domain:   %s   o276-295i408-430o457-479i644-661o
PI (pH):   %s   9.76
Sequence 868
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MASSAGYAGGDTGGLGDGEPPPPVPPQMRKQPSRIASGMRRLASKVSSAVPEMRGHKHTHSGAQSGLRGLRFLDKTSAGKDGWKTVEKRFDEMSTDGRLQRENFAKCIGMADSKEFASEVFVALSRRRHINPDDGVTKEQLKEFWEEMTDQNFDSRLRIFFDMCDKNGDGKLTEDEVKEIMVLSASANKLAKLKKHAGTYASLIMEELDPDHRGYIEIWQLETLLRGMVSASGPPDKMNMASQSLTRTMVPSSHRSPLQRRMNMAVDFVHENWKRIWVISLWGALNIALFVFKFIQYRRRAVFEVMGYCVCIAKGAAETLKLNMALILLPVCRNTLTRLRSTALSKVVPFDDNINFHKVIALTIAIGAATHTLSHVLCDFPRLVSCPKDKFMEKLGPFFNYVQPTWPILLTSIPGWTGILLILIMSFSFTLATHSFRRSVVKLPSPLHHLAGFNAFWYAHHLLVIAYVLLVMHSYFIFLTKQWYKRTTWMYLAVPVIFYASERSIRKIRERSYRVSIIKAAIYPGNVLSIYMKKPPSFKYKSGMYLFVKCPDVSPFEWHPFSITSAPGDDYLSVHIRTLGDWTSELRNLFGKACEAEVTSKKATLARLETTVVAHGLAEDTRFPKVFIDGPYGAPAQNYRKYDILLLIGLGIGATPFISILKDLLNNIKSNQEMESTHDTELGCSFKTNGPGRAYFYWVTREQGSFEWFKSVMNEVAESDRDDVIEMHNYLTSVYEEGDARSALIAMVQSLQHAKNGVDIVSGSKIRTHFARPNWRKVFSDLASAHKNSRIGVFYCGSPTLTKTLRDLSIEFSSTTTTRFHFHKENF

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 3, 14 introns) and 3 ESTs.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TGGCATCGTCGGCGGGGTACGCCGGTGGCGACACGGGAGGTCTGGGCGACGGGGAGCCCCCGCCCCCGGTGCCGCCGCAGATGAGGAAGCAGCCGTCGCGGATCGCGTCGGGGATGCGTC
GGCTGGCGTCGAAGGTGTCGTCGGCGGTGCCAGAGATGCGGGGCCACAAGCATACACACTCGGGCGCGCAGTCGGGCTTGCGCGGGCTGCGCTTCCTCGACAAGACCTCTGCCGGCAAGG
ACGGCTGGAAGACCGTCGAGAAGCGGTTCGACGAGATGAGCACCGACGGCCGGCTGCAGAGGGAGAACTTCGCCAAGTGCATCG
GTGAGTCTTGCTGAGACCTGTCCCTGTCACGGGCTC
ACGGCTCGTCGTCTCGGTGATGTGATATATATGATCTGTCTATCCTGTAGAATGAGAACGACGATGCTAGGTTTTCTTTATGAAAGACATATGCATGTAAATTTGTTGAGAAAAAGTTGA
TCTATTTTGTGCTGGATTGGATGTATGATTACCTGATGCTCCGCTATATATAATCTGCGTCTTAAAGGTATGGCTGATTCAAAGGAGTTTGCAAGCGAGGTATTTGTGGCATTGTCTAGG
AGAAGACACATCAATCCGGACGACGGTGTAACAAAAGAACAACTAAAGGAGTTCTGGGAGGAGATGACAGACCAGAACTTTGATTCCCGGCTACGCATTTTCTTTGACAT
GTAAACCTGA
CCTCCAGTTCCCTTCGTTTCCATACTGAAATACGGATTGCTTTCGTCTTGACGAGATGTGCTTGCAACCAGGTGTGACAAGAACGGTGATGGTAAGCTGACAGAAGATGAGGTCAAGGAG
GTTAGCTTCTAGTGTTCGAACAAGTAGTTATGGCAGATGTTCTGCCAAGTGTTAACTTGTACTCCCTCCGTCCCAGTATATAAGGCGCAACTACCTCTGGTTCAAAGACCAAGAACGCAT
TTAATTCTCTCTCAGCACTAGTACTACTACATTAATGTTTGTGAGAGAGCACGCCTTATATTATAGGACATGAATAAAAAGTGGTTACGCCTTATATACTAGGACGGAGGGAGTATAAGT
GTAAAATTTCTATTTCACGATCATTTGTGTGCAGATCATGGTGCTAAGTGCCTCAGCAAACAAGCTTGCCAAACTGAAGAAACATGCTGGAACCTACGCCTCTCTGATCATGGAGGAGCT
GGACCCTGATCACCGCGGCTACATTGAG
GTGCACGATCCCGGACATCTATCGAAACCCTTTATTAATTTGCTTCTCTCAGACAGTCAGTCAGCGACAGAGCAGCAGCATAGAGTACTGAC
AGAAAACAGAAAACAGATTTGGCAGCTGGAGACCCTGCTTCGGGGGATGGTGTCGGCCTCAGGGCCGCCGGACAAGATGAACATGGCGTCCCAATCTCTGACGAGGACGATGGTGCCTTC
CAGCCACCGGAGCCCACTGCAGCGGCGCATGAACATGGCTGTGGACTTCGTCCATGAGAACTGGAAGAGGATATGGGTGATCTCCCTCTGGGGCGCCCTCAACATCGCCCTCTTCGTATT
CAAGTTCATCCAGTACCGGAGGCGCGCGGTGTTCGAGGTGATGGGCTACTGCGTCTGCATCGCCAAGGGCGCCGCCGAGACCCTCAAGCTCAACATGGCGCTCATACTGCTGCCGGTGTG
CCGGAACACGCTCACAAGGCTGCGGTCCACCGCGCTCAGCAAGGTCGTGCCGTTCGACGACAACATAAACTTCCACAAG
GTACGGTGCTGAGCTTGCCACACACAATGTTCGCAATAAAT
GCATCTATCTGGCTGGCATGTTCGTTCGCAATGACATTGTCCATCATAATGTAGGTCATCGCGCTTACAATCGCCATAGGAGCTGCAACCCATACGCTTTCACACGTCCTCTGCGACTTC
CCCAGGCTGGTGTCGTGCCCCAAGGACAAGTTCATGGAGAAGCTGGGGCCCTTCTTCAACTACGTTCAGCCAACATGGCCGATTCTGCTGACGAGCATCCCGGGATGGACCGGGATCCTC
CTCATCCTCATAATGTCCTTCTCCTTCACGCTCGCCACGCACTCCTTCCGGAGGAGCGTCGTGAAGCTGCCGTCACCGCTGCACCACCTGGCCGGCTTCAACGCCTTCTGGTATGCCCAC
CACCTGCTGGTGATCGCCTATGTCCTCCTGGTGATGCACTCATACTTCATATTCCTCACCAAGCAGTGGTACAAGAGAACG
GTACGTATTATTTTTGTTCAGTATTATTTGATATATATA
TATATATATATATGTGTGACCAACAAGCTTGAATTGGAATCCCAATTTAATTTGCTTGCCTTTTCAGACATGGATGTACTTGGCAGTCCCTGTCATCTTCTATGCCTCTGAGAGAAGTAT
CAGAAAAATTCGTGAGAGAAGCTATCGCGTGAGCATCATAAAG
GTAAAGTGATATATATGGTCCCTTTTCAGTTTGTTTGCTGTCTTAATATAAATAAATTTCTCCTTATATTACTTCTG
CAAGCGGACTTCTATTATTAATTTATATATATATATTTATGTGTCACACAGGCAGCAATTTACCCTGGAAACGTGCTCTCAATTTACATGAAGAAGCCACCAAGCTTCAAGTACAAAAGT
GGGATGTACCTGTTTGTAAAATGCCCAGACGTTTCACCTTTTGAATG
GTACCAAGGCCCGCAGCATTGTCATTTTCAAGTCAGCATGATGACACTCCTAAAGAACTAAACTGTCCTAATA
AGATTCGTCCATATCTCTGCAATGCAGGCACCCCTTCTCTATCACTTCGGCTCCTGGAGATGACTACTTGAGCGTTCATATCCGTACATTAGGTGATTGGACATCAGAACTCAGGAATCT
ATTTGGGAAG
GTCAGTTGACCGAGCACTTCAGAAAGGGGAAAAAAATCTGGAGCCTATTTCCTCATAGTAAGTTTGACATGAAAAATATGTTTCATGCAGGCTTGTGAAGCAGAAGTAAC
TTCTAAGAAGGCTACACTAGCTAGACTTGAAACAACTGTTGTGGCACATGGTCTGGCAGAGGACACTAG
GTGATTGATTGCCTCATCTGTTTCATATATATGCTGTCTGGCTGTAGAATG
TTTTCCTGAGTACATTTGGTAACACTACAACACTACGGTGAGAGAGTTATCACAAAGTGGCACTTTAATCAACACTCAACAGGTTGACAAGGCTTTAATTTGACTGGGAAGTTTGTCATA
AGACGTCACCTATTTTCTTTTTTAAAAAAGCTATATGCTTAGTTCAATCTGACTTGGCTTTATTCATTTAGGTTTCCTAAAGTCTTCATAGACGGCCCTTATGGTGCACCGGCTCAAAAC
TACCGGAAATATGACATTCTTTTGCTTATCGGGCTCGGGATTGGTGCAACTCCTTTCATCAGCATACTGAAGGATCTCCTCAACAACATAAAGTCCAACCAG
GTAAAACTGTGCTGAGCT
CTTGCAAATCTTTTCCAAATGGACAGCAAAAATGTTCAGTTCAGTTGCATTGAAACAGGAGATGGAGAGCACGCATGACACGGAGTTAGGTTGCAGCTTCAAGACGAATGGGCCAGGAAG
AGCCTACTTCTACTGGGTTACCAGAGAGCAAGGCTCCTTCGAGTGGTTCAAAAGTGTCATGAACGAAGTTGCCGAGAGTGATCGTGAT
GTACTTACTGATCTGATGCTCACAACTAATTA
ATACATCCCTCCATTCCTAACTGGCTAATTATTACCAGAAAATTCAGAGTGATACATCCTCCTCGTTCTATCTATGCATACAGGATGTGATAGAGATGCACAATTACCTGACCAGCGTGT
ACGAAGAAGGCGACGCGAGGTCAGCCCTGATTGCCATGGTCCAGTCACTTCAACATGCCAAGAACGGCGTGGATATTGTCTCAGGCAGCAAG
GTGAAAGAAAGAAACAAGCATCTCCTTT
CATTTCCTCTGTCTCTCTTATCTGCACAAAATTCAGATATGCTGTACCTGTTTCCAGTTCTGAGTGACCTTTGGATTTGCAGATTCGAACGCATTTTGCAAGGCCAAACTGGAGAAAAGT
CTTCTCTGATCTGGCCAGTGCTCACAAGAACTCACGGATAG
GTGAGTTTAATATATGATACTAAAATCAGAGAACCCACCTTGTTTTGATGATGAAGAAGATAAGAAAATCGACCGACGT
ACATAGCTAATGCACAAATATTTATTAAGAAATTGATCTTGGCACGCAGGTGTCTTCTACTGTGGATCTCCAACACTTACGAAGACCCTAAGAGATCTTTCAATAGAGTTCAGCAGTACC
ACGACGACCCGATTCCATTTCCACAAAGAGAATTTCTAA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TGGCATCGTCGGCGGGGTACGCCGGTGGCGACACGGGAGGTCTGGGCGACGGGGAGCCCCCGCCCCCGGTGCCGCCGCAGATGAGGAAGCAGCCGTCGCGGATCGCGTCGGGGATGCGTC
GGCTGGCGTCGAAGGTGTCGTCGGCGGTGCCAGAGATGCGGGGCCACAAGCATACACACTCGGGCGCGCAGTCGGGCTTGCGCGGGCTGCGCTTCCTCGACAAGACCTCTGCCGGCAAGG
ACGGCTGGAAGACCGTCGAGAAGCGGTTCGACGAGATGAGCACCGACGGCCGGCTGCAGAGGGAGAACTTCGCCAAGTGCATCG
GTATGGCTGATTCAAAGGAGTTTGCAAGCGAGGTAT
TTGTGGCATTGTCTAGGAGAAGACACATCAATCCGGACGACGGTGTAACAAAAGAACAACTAAAGGAGTTCTGGGAGGAGATGACAGACCAGAACTTTGATTCCCGGCTACGCATTTTCT
TTGACAT
GTGTGACAAGAACGGTGATGGTAAGCTGACAGAAGATGAGGTCAAGGAGATCATGGTGCTAAGTGCCTCAGCAAACAAGCTTGCCAAACTGAAGAAACATGCTGGAACCTACG
CCTCTCTGATCATGGAGGAGCTGGACCCTGATCACCGCGGCTACATTGAG
ATTTGGCAGCTGGAGACCCTGCTTCGGGGGATGGTGTCGGCCTCAGGGCCGCCGGACAAGATGAACATGG
CGTCCCAATCTCTGACGAGGACGATGGTGCCTTCCAGCCACCGGAGCCCACTGCAGCGGCGCATGAACATGGCTGTGGACTTCGTCCATGAGAACTGGAAGAGGATATGGGTGATCTCCC
TCTGGGGCGCCCTCAACATCGCCCTCTTCGTATTCAAGTTCATCCAGTACCGGAGGCGCGCGGTGTTCGAGGTGATGGGCTACTGCGTCTGCATCGCCAAGGGCGCCGCCGAGACCCTCA
AGCTCAACATGGCGCTCATACTGCTGCCGGTGTGCCGGAACACGCTCACAAGGCTGCGGTCCACCGCGCTCAGCAAGGTCGTGCCGTTCGACGACAACATAAACTTCCACAAG
GTCATCG
CGCTTACAATCGCCATAGGAGCTGCAACCCATACGCTTTCACACGTCCTCTGCGACTTCCCCAGGCTGGTGTCGTGCCCCAAGGACAAGTTCATGGAGAAGCTGGGGCCCTTCTTCAACT
ACGTTCAGCCAACATGGCCGATTCTGCTGACGAGCATCCCGGGATGGACCGGGATCCTCCTCATCCTCATAATGTCCTTCTCCTTCACGCTCGCCACGCACTCCTTCCGGAGGAGCGTCG
TGAAGCTGCCGTCACCGCTGCACCACCTGGCCGGCTTCAACGCCTTCTGGTATGCCCACCACCTGCTGGTGATCGCCTATGTCCTCCTGGTGATGCACTCATACTTCATATTCCTCACCA
AGCAGTGGTACAAGAGAACG
ACATGGATGTACTTGGCAGTCCCTGTCATCTTCTATGCCTCTGAGAGAAGTATCAGAAAAATTCGTGAGAGAAGCTATCGCGTGAGCATCATAAAGGCAG
CAATTTACCCTGGAAACGTGCTCTCAATTTACATGAAGAAGCCACCAAGCTTCAAGTACAAAAGTGGGATGTACCTGTTTGTAAAATGCCCAGACGTTTCACCTTTTGAATG
GCACCCCT
TCTCTATCACTTCGGCTCCTGGAGATGACTACTTGAGCGTTCATATCCGTACATTAGGTGATTGGACATCAGAACTCAGGAATCTATTTGGGAAG
GCTTGTGAAGCAGAAGTAACTTCTA
AGAAGGCTACACTAGCTAGACTTGAAACAACTGTTGTGGCACATGGTCTGGCAGAGGACACTAG
GTTTCCTAAAGTCTTCATAGACGGCCCTTATGGTGCACCGGCTCAAAACTACCGGA
AATATGACATTCTTTTGCTTATCGGGCTCGGGATTGGTGCAACTCCTTTCATCAGCATACTGAAGGATCTCCTCAACAACATAAAGTCCAACCAG
GAGATGGAGAGCACGCATGACACGG
AGTTAGGTTGCAGCTTCAAGACGAATGGGCCAGGAAGAGCCTACTTCTACTGGGTTACCAGAGAGCAAGGCTCCTTCGAGTGGTTCAAAAGTGTCATGAACGAAGTTGCCGAGAGTGATC
GTGAT
GATGTGATAGAGATGCACAATTACCTGACCAGCGTGTACGAAGAAGGCGACGCGAGGTCAGCCCTGATTGCCATGGTCCAGTCACTTCAACATGCCAAGAACGGCGTGGATATTG
TCTCAGGCAGCAAG
ATTCGAACGCATTTTGCAAGGCCAAACTGGAGAAAAGTCTTCTCTGATCTGGCCAGTGCTCACAAGAACTCACGGATAGGTGTCTTCTACTGTGGATCTCCAACAC
TTACGAAGACCCTAAGAGATCTTTCAATAGAGTTCAGCAGTACCACGACGACCCGATTCCATTTCCACAAAGAGAATTTCTAA

Retrieve as FASTA