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Entry information : SbRboh04 (Sobic.003G175000.1[2.1] / Sb03g022070[1.4])
Entry ID 981
Creation 2008-11-18 (Christophe Dunand)
Last sequence changes 2015-12-09 (Catherine Mathe)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2015-12-15 (Christophe Dunand)
Peroxidase information: SbRboh04 (Sobic.003G175000.1[2.1] / Sb03g022070[1.4])
Name (synonym) SbRboh04 (Sobic.003G175000.1[2.1] / Sb03g022070[1.4])
Class Respiratory burst oxidase homolog    [Orthogroup: Rboh003]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue types Leaves
Seedlings
Inducers Colletotrichum inoculation
Heat shock stress
Pathogen interaction
Repressor N/D
Best BLASTp hits
Perox score E-value SbRboh04
start..stop		 S start..stop
ZmRboh15 1574 0 1..827 1..821
ZmRboh09 1570 0 1..827 1..822
OsRboh04 1443 0 4..827 2..819
BdiRboh09 1436 0 22..827 28..835
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 42498065..42498389 323 N° 2 42498613..42498775 161 N° 3 42498857..42498905 47 N° 4 42499180..42499293 112
N° 5 42499402..42499824 421 N° 6 42499920..42500306 385 N° 7 42500413..42500508 94 N° 8 42500637..42500752 114
N° 9 42500853..42500955 101 N° 10 42501046..42501134 87 N° 11 42501377..42501527 149 N° 12 42501604..42501753 148
N° 13 42501869..42501997 127 N° 14 42502108..42502186 77 N° 15 42502315..42502424 108  
join(42498065..42498389,42498613..42498775,42498857..42498905,42499180..42499293 ,42499402..42499824,42499920..42500306,42500413..42500508,42500637..42500752,425 00853..42500955,42501046..42501134,42501377..42501527,42501604..42501753,4250186 9..42501997,42502108..42502186,42502315..42502424)


exon

Literature and cross-references SbRboh04 (Sobic.003G175000.1[2.1] / Sb03g022070[1.4])
Literature Cordonnier-Pratt,M.-M. et al., unpublished
DNA ref. Phytozome 12:   chromosome_3 (42498065..42502424)
Cluster/Prediction ref. UniGene:   Sbi.1848 [3' end]
Protein sequence: SbRboh04 (Sobic.003G175000.1[2.1] / Sb03g022070[1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   827
PWM (Da):   %s   93445.91 Transmb domain:   %s   o276-295i408-430o457-479i644-661o
PI (pH):   %s   9.76
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MASSAGYAGGDTGGLGDGEPPPPVPPQMRKQPSRIASGMRRLASKVSSAVPEMRGHKHTHSGAQSGLRGLRFLDKTSAGKDGWKTVEKRFDEMSTDGRLQRENFAKCIGMADSKEFASEV
FVALSRRRHINPDDGVTKEQLKEFWEEMTDQNFDSRLRIFFDMCDKNGDGKLTEDEVKIMVLSASANKLAKLKKHAGTYASLIMEELDPDHRGYIEIWQLETLLRGMVSASGPPDKMNMA
SQSLTRTMVPSSHRSPLQRRMNMAVDFVHENWKRIWVISLWGALNIALFVFKFIQYRRRAVFEVMGYCVCIAKGAAETLKLNMALILLPVCRNTLTRLRSTALSKVVPFDDNINFHKVIA
LTIAIGAATHTLSHVLCDFPRLVSCPKDKFMEKLGPFFNYVQPTWPILLTSIPGWTGILLILIMSFSFTLATHSFRRSVVKLPSPLHHLAGFNAFWYAHHLLVIAYVLLVMHSYFIFLTK
QWYKRTTWMYLAVPVIFYASERSIRKIRERSYRVSIIKAAIYPGNVLSIYMKKPPSFKYKSGMYLFVKCPDVSPFEWHPFSITSAPGDDYLSVHIRTLGDWTSELRNLFGACEAEVTSKK
ATLARLETTVVAHGLAEDTRFPKVFIDGPYGAPAQNYRKYDILLLIGLGIGATPFISILKDLLNNIKSNEMESTHDTELGCSFKTNGPGRAYFYWVTREQGSFEWFKSVMNEVAESDRDD
VIEMHNYLTSVYEEGDARSALIAMVQSLQHAKNGVDIVSGSKIRTHFARPNWRKVFSDLASAHKNSRIGVFYCGSPTLTKTLRDLSIEFSSTTTTRFHFHKENF

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 3, 14 introns) and 3 ESTs.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCATCGTCGGCGGGGTACGCCGGTGGCGACACGGGAGGTCTGGGCGACGGGGAGCCCCCGCCCCCGGTGCCGCCGCAGATGAGGAAGCAGCCGTCGCGGATCGCGTCGGGGATGCGT
CGGCTGGCGTCGAAGGTGTCGTCGGCGGTGCCAGAGATGCGGGGCCACAAGCATACACACTCGGGCGCGCAGTCGGGCTTGCGCGGGCTGCGCTTCCTCGACAAGACCTCTGCCGGCAAG
GACGGCTGGAAGACCGTCGAGAAGCGGTTCGACGAGATGAGCACCGACGGCCGGCTGCAGAGGGAGAACTTCGCCAAGTGCATCGCGGTGAGTCTTGCTGAGACCTGTCCCTGTCACGGG
CTCACGGCTCGTCGTCTCGGTGATGTGATATATATGATCTGTCTATCCTGTAGAATGAGAACGACGATGCTAGGTTTTCTTTATGAAAGACATATGCATGTAAATTTGTTGAGAAAAAGT
TGATCTATTTTGTGCTGGATTGGATGTATGATTACCTGATGCTCCGCTATATATAATCTGCGTCTTAAAGGTATGGCTGATTCAAAGGAGTTTGCAAGCGAGGTATTTGTGGCATTGTCT
AGGAGAAGACACATCAATCCGGACGACGGTGTAACAAAAGAACAACTAAAGGAGTTCTGGGAGGAGATGACAGACCAGAACTTTGATTCCCGGCTACGCATTTTCTTTGACATATGTAAA
CCTGACCTCCAGTTCCCTTCGTTTCCATACTGAAATACGGATTGCTTTCGTCTTGACGAGATGTGCTTGCAACCAGGTGTGACAAGAACGGTGATGGTAAGCTGACAGAAGATGAGGTCA
AGGAGAGGTTAGCTTCTAGTGTTCGAACAAGTAGTTATGGCAGATGTTCTGCCAAGTGTTAACTTGTACTCCCTCCGTCCCAGTATATAAGGCGCAACTACCTCTGGTTCAAAGACCAAG
AACGCATTTAATTCTCTCTCAGCACTAGTACTACTACATTAATGTTTGTGAGAGAGCACGCCTTATATTATAGGACATGAATAAAAAGTGGTTACGCCTTATATACTAGGACGGAGGGAG
TATAAGTGTAAAATTTCTATTTCACGATCATTTGTGTGCAGATCATGGTGCTAAGTGCCTCAGCAAACAAGCTTGCCAAACTGAAGAAACATGCTGGAACCTACGCCTCTCTGATCATGG
AGGAGCTGGACCCTGATCACCGCGGCTACATTGAGAGGTGCACGATCCCGGACATCTATCGAAACCCTTTATTAATTTGCTTCTCTCAGACAGTCAGTCAGCGACAGAGCAGCAGCATAG
AGTACTGACAGAAAACAGAAAACAGATTTGGCAGCTGGAGACCCTGCTTCGGGGGATGGTGTCGGCCTCAGGGCCGCCGGACAAGATGAACATGGCGTCCCAATCTCTGACGAGGACGAT
GGTGCCTTCCAGCCACCGGAGCCCACTGCAGCGGCGCATGAACATGGCTGTGGACTTCGTCCATGAGAACTGGAAGAGGATATGGGTGATCTCCCTCTGGGGCGCCCTCAACATCGCCCT
CTTCGTATTCAAGTTCATCCAGTACCGGAGGCGCGCGGTGTTCGAGGTGATGGGCTACTGCGTCTGCATCGCCAAGGGCGCCGCCGAGACCCTCAAGCTCAACATGGCGCTCATACTGCT
GCCGGTGTGCCGGAACACGCTCACAAGGCTGCGGTCCACCGCGCTCAGCAAGGTCGTGCCGTTCGACGACAACATAAACTTCCACAAGAGGTACGGTGCTGAGCTTGCCACACACAATGT
TCGCAATAAATGCATCTATCTGGCTGGCATGTTCGTTCGCAATGACATTGTCCATCATAATGTAGGTCATCGCGCTTACAATCGCCATAGGAGCTGCAACCCATACGCTTTCACACGTCC
TCTGCGACTTCCCCAGGCTGGTGTCGTGCCCCAAGGACAAGTTCATGGAGAAGCTGGGGCCCTTCTTCAACTACGTTCAGCCAACATGGCCGATTCTGCTGACGAGCATCCCGGGATGGA
CCGGGATCCTCCTCATCCTCATAATGTCCTTCTCCTTCACGCTCGCCACGCACTCCTTCCGGAGGAGCGTCGTGAAGCTGCCGTCACCGCTGCACCACCTGGCCGGCTTCAACGCCTTCT
GGTATGCCCACCACCTGCTGGTGATCGCCTATGTCCTCCTGGTGATGCACTCATACTTCATATTCCTCACCAAGCAGTGGTACAAGAGAACGCGGTACGTATTATTTTTGTTCAGTATTA
TTTGATATATATATATATATATATATGTGTGACCAACAAGCTTGAATTGGAATCCCAATTTAATTTGCTTGCCTTTTCAGACATGGATGTACTTGGCAGTCCCTGTCATCTTCTATGCCT
CTGAGAGAAGTATCAGAAAAATTCGTGAGAGAAGCTATCGCGTGAGCATCATAAAGAGGTAAAGTGATATATATGGTCCCTTTTCAGTTTGTTTGCTGTCTTAATATAAATAAATTTCTC
CTTATATTACTTCTGCAAGCGGACTTCTATTATTAATTTATATATATATATTTATGTGTCACACAGGCAGCAATTTACCCTGGAAACGTGCTCTCAATTTACATGAAGAAGCCACCAAGC
TTCAAGTACAAAAGTGGGATGTACCTGTTTGTAAAATGCCCAGACGTTTCACCTTTTGAATGTGGTACCAAGGCCCGCAGCATTGTCATTTTCAAGTCAGCATGATGACACTCCTAAAGA
ACTAAACTGTCCTAATAAGATTCGTCCATATCTCTGCAATGCAGGCACCCCTTCTCTATCACTTCGGCTCCTGGAGATGACTACTTGAGCGTTCATATCCGTACATTAGGTGATTGGACA
TCAGAACTCAGGAATCTATTTGGGAAGAGGTCAGTTGACCGAGCACTTCAGAAAGGGGAAAAAAATCTGGAGCCTATTTCCTCATAGTAAGTTTGACATGAAAAATATGTTTCATGCAGG
CTTGTGAAGCAGAAGTAACTTCTAAGAAGGCTACACTAGCTAGACTTGAAACAACTGTTGTGGCACATGGTCTGGCAGAGGACACTAGAGGTGATTGATTGCCTCATCTGTTTCATATAT
ATGCTGTCTGGCTGTAGAATGTTTTCCTGAGTACATTTGGTAACACTACAACACTACGGTGAGAGAGTTATCACAAAGTGGCACTTTAATCAACACTCAACAGGTTGACAAGGCTTTAAT
TTGACTGGGAAGTTTGTCATAAGACGTCACCTATTTTCTTTTTTAAAAAAGCTATATGCTTAGTTCAATCTGACTTGGCTTTATTCATTTAGGTTTCCTAAAGTCTTCATAGACGGCCCT
TATGGTGCACCGGCTCAAAACTACCGGAAATATGACATTCTTTTGCTTATCGGGCTCGGGATTGGTGCAACTCCTTTCATCAGCATACTGAAGGATCTCCTCAACAACATAAAGTCCAAC
CAGAGGTAAAACTGTGCTGAGCTCTTGCAAATCTTTTCCAAATGGACAGCAAAAATGTTCAGTTCAGTTGCATTGAAACAGGAGATGGAGAGCACGCATGACACGGAGTTAGGTTGCAGC
TTCAAGACGAATGGGCCAGGAAGAGCCTACTTCTACTGGGTTACCAGAGAGCAAGGCTCCTTCGAGTGGTTCAAAAGTGTCATGAACGAAGTTGCCGAGAGTGATCGTGATATGTACTTA
CTGATCTGATGCTCACAACTAATTAATACATCCCTCCATTCCTAACTGGCTAATTATTACCAGAAAATTCAGAGTGATACATCCTCCTCGTTCTATCTATGCATACAGGATGTGATAGAG
ATGCACAATTACCTGACCAGCGTGTACGAAGAAGGCGACGCGAGGTCAGCCCTGATTGCCATGGTCCAGTCACTTCAACATGCCAAGAACGGCGTGGATATTGTCTCAGGCAGCAAGAGG
TGAAAGAAAGAAACAAGCATCTCCTTTCATTTCCTCTGTCTCTCTTATCTGCACAAAATTCAGATATGCTGTACCTGTTTCCAGTTCTGAGTGACCTTTGGATTTGCAGATTCGAACGCA
TTTTGCAAGGCCAAACTGGAGAAAAGTCTTCTCTGATCTGGCCAGTGCTCACAAGAACTCACGGATAGAGGTGAGTTTAATATATGATACTAAAATCAGAGAACCCACCTTGTTTTGATG
ATGAAGAAGATAAGAAAATCGACCGACGTACATAGCTAATGCACAAATATTTATTAAGAAATTGATCTTGGCACGCAGGTGTCTTCTACTGTGGATCTCCAACACTTACGAAGACCCTAA
GAGATCTTTCAATAGAGTTCAGCAGTACCACGACGACCCGATTCCATTTCCACAAAGAGAATTTCTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCATCGTCGGCGGGGTACGCCGGTGGCGACACGGGAGGTCTGGGCGACGGGGAGCCCCCGCCCCCGGTGCCGCCGCAGATGAGGAAGCAGCCGTCGCGGATCGCGTCGGGGATGCGT
CGGCTGGCGTCGAAGGTGTCGTCGGCGGTGCCAGAGATGCGGGGCCACAAGCATACACACTCGGGCGCGCAGTCGGGCTTGCGCGGGCTGCGCTTCCTCGACAAGACCTCTGCCGGCAAG
GACGGCTGGAAGACCGTCGAGAAGCGGTTCGACGAGATGAGCACCGACGGCCGGCTGCAGAGGGAGAACTTCGCCAAGTGCATCGGTATGGCTGATTCAAAGGAGTTTGCAAGCGAGGTA
TTTGTGGCATTGTCTAGGAGAAGACACATCAATCCGGACGACGGTGTAACAAAAGAACAACTAAAGGAGTTCTGGGAGGAGATGACAGACCAGAACTTTGATTCCCGGCTACGCATTTTC
TTTGACATGTGTGACAAGAACGGTGATGGTAAGCTGACAGAAGATGAGGTCAAGGAGATCATGGTGCTAAGTGCCTCAGCAAACAAGCTTGCCAAACTGAAGAAACATGCTGGAACCTAC
GCCTCTCTGATCATGGAGGAGCTGGACCCTGATCACCGCGGCTACATTGAGATTTGGCAGCTGGAGACCCTGCTTCGGGGGATGGTGTCGGCCTCAGGGCCGCCGGACAAGATGAACATG
GCGTCCCAATCTCTGACGAGGACGATGGTGCCTTCCAGCCACCGGAGCCCACTGCAGCGGCGCATGAACATGGCTGTGGACTTCGTCCATGAGAACTGGAAGAGGATATGGGTGATCTCC
CTCTGGGGCGCCCTCAACATCGCCCTCTTCGTATTCAAGTTCATCCAGTACCGGAGGCGCGCGGTGTTCGAGGTGATGGGCTACTGCGTCTGCATCGCCAAGGGCGCCGCCGAGACCCTC
AAGCTCAACATGGCGCTCATACTGCTGCCGGTGTGCCGGAACACGCTCACAAGGCTGCGGTCCACCGCGCTCAGCAAGGTCGTGCCGTTCGACGACAACATAAACTTCCACAAGGTCATC
GCGCTTACAATCGCCATAGGAGCTGCAACCCATACGCTTTCACACGTCCTCTGCGACTTCCCCAGGCTGGTGTCGTGCCCCAAGGACAAGTTCATGGAGAAGCTGGGGCCCTTCTTCAAC
TACGTTCAGCCAACATGGCCGATTCTGCTGACGAGCATCCCGGGATGGACCGGGATCCTCCTCATCCTCATAATGTCCTTCTCCTTCACGCTCGCCACGCACTCCTTCCGGAGGAGCGTC
GTGAAGCTGCCGTCACCGCTGCACCACCTGGCCGGCTTCAACGCCTTCTGGTATGCCCACCACCTGCTGGTGATCGCCTATGTCCTCCTGGTGATGCACTCATACTTCATATTCCTCACC
AAGCAGTGGTACAAGAGAACGACATGGATGTACTTGGCAGTCCCTGTCATCTTCTATGCCTCTGAGAGAAGTATCAGAAAAATTCGTGAGAGAAGCTATCGCGTGAGCATCATAAAGGCA
GCAATTTACCCTGGAAACGTGCTCTCAATTTACATGAAGAAGCCACCAAGCTTCAAGTACAAAAGTGGGATGTACCTGTTTGTAAAATGCCCAGACGTTTCACCTTTTGAATGGCACCCC
TTCTCTATCACTTCGGCTCCTGGAGATGACTACTTGAGCGTTCATATCCGTACATTAGGTGATTGGACATCAGAACTCAGGAATCTATTTGGGAAGGCTTGTGAAGCAGAAGTAACTTCT
AAGAAGGCTACACTAGCTAGACTTGAAACAACTGTTGTGGCACATGGTCTGGCAGAGGACACTAGGTTTCCTAAAGTCTTCATAGACGGCCCTTATGGTGCACCGGCTCAAAACTACCGG
AAATATGACATTCTTTTGCTTATCGGGCTCGGGATTGGTGCAACTCCTTTCATCAGCATACTGAAGGATCTCCTCAACAACATAAAGTCCAACCAGGAGATGGAGAGCACGCATGACACG
GAGTTAGGTTGCAGCTTCAAGACGAATGGGCCAGGAAGAGCCTACTTCTACTGGGTTACCAGAGAGCAAGGCTCCTTCGAGTGGTTCAAAAGTGTCATGAACGAAGTTGCCGAGAGTGAT
CGTGATGATGTGATAGAGATGCACAATTACCTGACCAGCGTGTACGAAGAAGGCGACGCGAGGTCAGCCCTGATTGCCATGGTCCAGTCACTTCAACATGCCAAGAACGGCGTGGATATT
GTCTCAGGCAGCAAGATTCGAACGCATTTTGCAAGGCCAAACTGGAGAAAAGTCTTCTCTGATCTGGCCAGTGCTCACAAGAACTCACGGATAGGTGTCTTCTACTGTGGATCTCCAACA
CTTACGAAGACCCTAAGAGATCTTTCAATAGAGTTCAGCAGTACCACGACGACCCGATTCCATTTCCACAAAGAGAATTTCTAA

Retrieve as FASTA