Entry information : TsPrx50 (Thhalv10025717m)
Entry ID 9818
Creation 2011-11-18 (Qiang Li)
Last sequence changes 2011-11-21 (Qiang Li)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2012-07-27 (Christophe Dunand)
Peroxidase information: TsPrx50 (Thhalv10025717m)
Name (synonym) TsPrx50 (Thhalv10025717m)
Class Class III peroxidase    [Orthogroup: Prx011]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Eutrema
Organism Thellungiella salsuginea (Eutrema salsugineum)    [TaxId: 72664 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value TsPrx50
start..stop
S start..stop
ThPrx51 509 0 23..324 23..328
TsPrx51 509 0 23..324 23..328
BnPrx50-1_other 509 0 19..324 17..326
BoPrx50_other 508 0 19..324 17..326
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1018735..1018947 213 N° 2 1018463..1018663 201 N° 3 1018192..1018357 166 N° 4 1017486..1017880 395
complement(join(1017486..1017880,1018192..1018357,1018463..1018663,1018735..1018 947))


exon

Literature and cross-references TsPrx50 (Thhalv10025717m)
DNA ref. Phytozome 12:   scaffold_1 (1018947..1017486)
Protein sequence: TsPrx50 (Thhalv10025717m)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   325 (300)
PWM (Da):   %s   35851.5 (33053.0) Transmb domain:   %s   i9-26o
PI (pH):   %s   8.2 (7.99) Peptide Signal:   %s   cut: 25 range:25-324
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MDANKMNRLLLLLSLFLILNISSAQLRRNFYAGICPDVEQIVKKAVEQKVQQASITVPAILRLYFHDCFVNGCDASVMIESTNDNKAEKDHPDNLSLAGDGFDAIVKAKQALDAVPNCRNKVSCADILTIATRDVVNIVGAPRYEVELGRLDGLSSTAARVEGKLPQPTDDVDKLTSHFAKNGLSLDDMIALSGAHTIGVAHCTKVLERIYGVKEDPKINATYLAQLKELCPRDVDPRRLVVMDPTTPGKFDNVYYKNLQQGKGFFKSDQVLFSDRRSKPTVNLWASNEQLFNQAFVNSMIKLGRVGVKTGRDGNIRRDCEAFN*

Retrieve as FASTA  
Remarks Complete sequence from genomic. Incorrect prediction from phytozome. The extra short PS at 5' end has been removed. No EST.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGATGCGAATAAAATGAATCGCTTATTGCTTCTTCTCTCTCTCTTTCTCATCCTAAATATATCATCAGCTCAACTCCGCCGTAATTTCTACGCCGGGATTTGCCCGGACGTCGAACAA
ATAGTCAAAAAGGCCGTTGAACAAAAAGTCCAACAAGCTTCCATCACCGTTCCCGCCATTCTCCGCCTTTACTTTCATGACTGTTTCGTAAAT
GTAAAACATATTATCTTTTTAAAATTC
TTTCTTAATCTTTAAATTTTGTCTTAATTAATTTAATTTCATAGGGTTGTGATGCATCGGTGATGATAGAGTCAACCAATGATAACAAGGCGGAGAAGGACCATCCAGATAATCTATCGT
TGGCCGGAGATGGATTTGACGCCATCGTTAAAGCCAAACAAGCTCTTGACGCCGTCCCAAATTGTCGTAACAAAGTTTCTTGCGCCGATATTCTCACGATTGCCACTCGTGACGTTGTTA
ATATC
GTTCGTAACTCATCACTAACTATATATTATACCATCTTTGATGCATCAAATAAATAAATTATAACATTTATTGTTGTAAATATAATTAATTTTGAGTTGATGTAGGTGGGTGCAC
CAAGGTACGAAGTGGAATTGGGGAGGCTTGATGGGCTATCATCGACGGCGGCAAGGGTAGAAGGAAAGCTGCCACAACCAACAGATGATGTTGACAAACTCACTTCACATTTCGCCAAAA
ATGGGCTTAGTCTTGACGACATGATCGCCCTCTCCG
GTAAATTTTTTTCTTATACTTCTCGATCGAGACAAGCGTCATCGATATTACAACGAATAACACAAGGACATTTTTCAAACTATA
TCATTAAATAATATTCACTCTATATGATATTAAGAGCTGATTTAAGGAAAAAGATTGTTTCATTCTAATTGATGTTTTAATTTTTACCTTTTTGTCAATTGTATCATGCAGTTTATTTTA
TTTTTGATTGTAGAAATATTATAATAAAATAAGCAAATTTATTTGGTCGGATGATTTAATGGGATAATTAATTTGGATGGTTTTGATGTAAAACAAAAAAAAAACAGGGGCACACACAAT
TGGAGTCGCTCATTGCACCAAGGTATTGGAGAGGATATACGGTGTCAAAGAAGACCCGAAGATAAACGCTACTTACTTAGCACAACTCAAAGAGCTGTGTCCTAGAGACGTGGATCCTCG
CAGATTGGTAGTTATGGACCCAACAACACCGGGAAAATTCGACAACGTTTACTACAAAAACTTGCAGCAAGGCAAAGGATTTTTCAAGTCTGACCAAGTTTTGTTCAGCGATCGTAGGTC
AAAGCCTACCGTCAACTTATGGGCTAGTAATGAACAGTTGTTTAATCAAGCTTTCGTTAACTCCATGATCAAGCTTGGTCGCGTTGGTGTTAAAACCGGCCGTGATGGTAATATCCGTCG
CGATTGTGAAGCCTTTAATTAG

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGATGCGAATAAAATGAATCGCTTATTGCTTCTTCTCTCTCTCTTTCTCATCCTAAATATATCATCAGCTCAACTCCGCCGTAATTTCTACGCCGGGATTTGCCCGGACGTCGAACAA
ATAGTCAAAAAGGCCGTTGAACAAAAAGTCCAACAAGCTTCCATCACCGTTCCCGCCATTCTCCGCCTTTACTTTCATGACTGTTTCGTAAAT
GGTTGTGATGCATCGGTGATGATAGAG
TCAACCAATGATAACAAGGCGGAGAAGGACCATCCAGATAATCTATCGTTGGCCGGAGATGGATTTGACGCCATCGTTAAAGCCAAACAAGCTCTTGACGCCGTCCCAAATTGTCGTAAC
AAAGTTTCTTGCGCCGATATTCTCACGATTGCCACTCGTGACGTTGTTAATATC
GTGGGTGCACCAAGGTACGAAGTGGAATTGGGGAGGCTTGATGGGCTATCATCGACGGCGGCAAGG
GTAGAAGGAAAGCTGCCACAACCAACAGATGATGTTGACAAACTCACTTCACATTTCGCCAAAAATGGGCTTAGTCTTGACGACATGATCGCCCTCTCCG
GGGCACACACAATTGGAGTC
GCTCATTGCACCAAGGTATTGGAGAGGATATACGGTGTCAAAGAAGACCCGAAGATAAACGCTACTTACTTAGCACAACTCAAAGAGCTGTGTCCTAGAGACGTGGATCCTCGCAGATTG
GTAGTTATGGACCCAACAACACCGGGAAAATTCGACAACGTTTACTACAAAAACTTGCAGCAAGGCAAAGGATTTTTCAAGTCTGACCAAGTTTTGTTCAGCGATCGTAGGTCAAAGCCT
ACCGTCAACTTATGGGCTAGTAATGAACAGTTGTTTAATCAAGCTTTCGTTAACTCCATGATCAAGCTTGGTCGCGTTGGTGTTAAAACCGGCCGTGATGGTAATATCCGTCGCGATTGT
GAAGCCTTTAATTAG

Retrieve as FASTA