View Redoxidase 9824

Entry information : TsPrx65 (Thhalv10000958m)

Entry ID	9824
Creation	2011-11-18 (Qiang Li)
Last sequence changes	2011-11-21 (Qiang Li)
Sequence status	complete
Reviewer	Christophe Dunand
Last annotation changes	2015-12-31 (Christophe Dunand)

Peroxidase information: TsPrx65 (Thhalv10000958m)

Name (synonym)

TsPrx65 (Thhalv10000958m)

Class

Class III peroxidase [Orthogroup: Prx002]

Taxonomy

Eukaryota Viridiplantae Streptophyta Brassicaceae Eutrema

Organism

Thellungiella salsuginea (Eutrema salsugineum) [TaxId: 72664 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	TsPrx65 start..stop	S start..stop
BnPrx65-2_other	645	0	1..330	1..330
BrPrx65-1Ab_other	630	0	1..330	1..330
BnPrx65-1_other	624	0	1..330	1..327
AlyPrx65	623	0	1..330	4..334

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	2123281..2124273	991
complement(join(2123281..2124273))

Literature and cross-references TsPrx65 (Thhalv10000958m)

DNA ref.	Phytozome 12: scaffold_20 (2124273..2123281)

Protein sequence: TsPrx65 (Thhalv10000958m)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	330 (306)
PWM (Da):	36683.57 (34036.0)	Transmb domain:	i7-29o
PI (pH):	7.78 (7.22)	Peptide Signal:	cut: 25 range:25-330

Sequence
Send to BLAST
Send to Peroxiscan

*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

MRLSRGPNPF VLLFVLIVAP AVSADVAILR TDYYQKTCPD FNKIVREAVS TKQSQQPTTA AGTLRLFFHD CFLEGCDASV LIATNSFNKA ERDDDLNDSL PGDAFDIVTR IKTALELSCP SVVSCADILA QATRDLVTMV GGPYFDVKLG RKDGLESKAH KVRGNVPMPN QTVHDIHGMF KKNGFTLREM VALSGAHTIG FSHCKEFSDR LYGPKADPEI NPRFATALKD LCKNHTVDDT
IAAFNDVMTP GKFDNMYFKN LKRGLGLLAS DHILFKNNRT RPFVELYASD EKAFFEDFAR AMEKLGTVGV KGDKEGEVRR RCDHFNNLNV *

Retrieve as FASTA

Remarks

Complete sequence from genomic (no intron). No EST.

DNA ►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

ATGCGTCTCT CTCGTGGCCC TAACCCTTTC GTTCTCCTCT TTGTTCTCAT TGTTGCACCA GCCGTATCGG CCGATGTAGC TATCCTGAGA ACGGACTACT ACCAAAAAAC ATGTCCCGAT TTCAACAAGA TTGTGCGTGA GGCCGTTTCA ACAAAGCAAT CTCAACAACC AACAACCGCG GCTGGGACAC TCCGTCTCTT TTTCCACGAT TGTTTCCTCG AAGGTTGTGA TGCGTCCGTT TTGATAGCCA CAAACTCGTT TAACAAAGCA GAACGTGACG ATGATCTCAA CGACTCTCTC CCAGGAGATG CTTTCGACAT CGTCACTAGG ATCAAGACAG CTTTGGAACT GTCTTGTCCG AGTGTGGTTT CCTGCGCTGA TATTTTAGCG CAGGCTACAC GTGACCTTGT CACGATGGTA GGAGGACCTT ACTTCGATGT GAAGCTTGGT CGTAAAGATG GACTCGAATC CAAAGCACAC AAAGTCCGAG GAAACGTCCC GATGCCAAAC CAGACGGTCC ACGACATCCA CGGGATGTTC AAGAAAAACG GGTTTACACT ACGCGAGATG GTTGCGTTAA GCGGAGCTCA CACAATCGGA TTCTCTCACT GCAAAGAGTT TAGTGACCGT CTCTACGGAC CAAAAGCCGA TCCAGAAATC AACCCGCGAT TCGCAACCGC TCTAAAAGAC CTATGCAAAA ACCACACCGT GGACGACACA ATCGCGGCGT TTAACGACGT GATGACACCA GGAAAATTCG ACAACATGTA CTTCAAGAAC CTAAAAAGAG GGCTAGGGCT TTTGGCTTCC GACCACATCC TTTTTAAGAA CAATAGGACG AGACCGTTCG TTGAGCTTTA CGCAAGTGAC GAGAAAGCAT TCTTTGAGGA TTTCGCACGT GCGATGGAGA AACTCGGCAC TGTTGGCGTC AAGGGCGACA AGGAAGGAGA AGTGAGACGT
AGGTGCGACC ACTTCAACAA TCTCAACGTG TAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

Retrieve as FASTA