RedOxiBase: View Perox 9825

Entry information : TsPrx42(Thhalv10025680m)

Entry ID	9825
Creation	2011-11-18 (Qiang Li)
Last sequence changes	2011-11-21 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2019-02-26 (Christophe Dunand)

Peroxidase information: TsPrx42(Thhalv10025680m)

Name

TsPrx42(Thhalv10025680m)

Class

Class III peroxidase [Orthogroup: Prx011]

Taxonomy

Eukaryota Viridiplantae Streptophyta Brassicaceae Eutrema

Organism

Thellungiella salsuginea (Eutrema salsugineum) [TaxId: 72664 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	TsPrx42 start..stop	S start..stop
ThPrx42	689	0	1..331	1..331
BrPrx42_other	684	0	1..331	1..331
BoPrx42_other	684	0	1..331	1..331
BnPrx42_other	684	0	1..331	1..331

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	7765613..7765843	231	N° 2	7766047..7766235	189	N° 3	7766363..7766528	166	N° 4	7766804..7767213	410
join(7765613..7765843,7766047..7766235,7766363..7766528,7766804..7767213)

Literature and cross-references TsPrx42(Thhalv10025680m)

Literature	Wong,C.E., Li,Y., Whitty,B., Diaz-Camino,C., Akhter,S.R., Brandle ,J., Golding,G.B., Weretinylk,E.A., Moffatt,B.A. and Griffith,M. Expressed Sequence Tags from the Yukon Ecotype of Thellungiella salsuginea Reveal Little Overlap in Gene Expression in Response to Cold, Drought and High Salinity Unpublished (2004)
DNA ref.	Phytozome 12: scaffold_1 (7765613..7767213)
EST ref.	GenBank: DN776782.1

Protein sequence: TsPrx42(Thhalv10025680m)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	331 (308)
PWM (Da):	37448.11 (35018.9)
PI (pH):	7.78 (7.82)	Peptide Signal:	cut: 24 range:24-331

Sequence 373
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MGGKGAMMVAILCLWALSATSEAVVTEEEPGLMMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVESCDASLLLDSTRRELGEKEHDRSFGLRNFRYIEEIKEALERECPGVVSCSDILVLSAREGIEAVGGPHIPMKTGRRDGRKSRTDMLESYLPDHNESISVVLEKFKSIGIDTPGLVALLGSHSVGRTHCVKLVHRLYPEVDPSLNPDHVPHMLHKCPDSIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLLLVDHQLAHDKRTRPIVKKMAKDQAYFFKEFTRAIQILSENNPLTGSKGEIRKQCNLANKIH*

Retrieve as FASTA

Remarks

Complete sequence from genomic and 24 ESTs (DN776782, DN777747, DN777640, DN772810, DN776724, DN778369, DN772786, DN778424, DN778596, DN776189, DN776105, DN775413, DN776953, DN778435, DN778720, DN775847, DN778426, DN776248, DN775746, DN775590, DN776251, DN775562, DN773336, DN774498.

Promoter►
Send to BLAST
Send to cis Analysis

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

CACACTTGGA TCCGAAATTT GCTTTTATAA GTCTGGTGAA AAAAAATTAA CGTCTTTTCT TTTGTCTTGG CATTGAATCT TGCAGGCCCC ATGGTTGATG TAACGTCAAG GGCACGGATG AGTACAGTTT CCACGTGTCA ATTCCATACA CTGAAATTGG ATTCTTCTAC TTAACCGATA ATAATAATGG TACCGGTTAT CATAATGTTC TGTTCAACAT ATGACATCTC TACACAGTTA CTCGTCATTA ATTTGTTAGT TAGAACTTGT AAATCAGTGT TTAGCGCACA CATGTTAAGT GGAGTCCACT GAGCTAGAGA GTGACATTAC AGTGTGGCCC CTACAGTGCT ATTTGGCGAA CACTTGGATA AGGGAACAAA AGTGTCGGTG GTCACAATAT TTCCATTTTT GTTTTAATGA AAATGTTCAG AATTTTTTTA CGTGAATACT GAATATACGA ATTCAGTGTA ATATTGGTAA CACAGATACT TCTTTATCCT TCTATGAATT TCTTAAAAAA TAGGTATACT GTCCTCTCAT TTTATAGAGC CGTTACTATA TTTTACCTCT TTTCGTATTA CCAAAACTAG TGAATTCGAT TCACTCTAAT CAAAATAAGT TCTGTAGATG CTGAAAAAGG AGAAATATAG TAGTCCCCAC TAAAAAACTA ATAGGAGGCC TTTAGCTTTT GGCGCACCGG TTATCATCAA AGAAATATAA AGTGTTATTT GTATAAATTT GAAAAAATTT GTAGGTTGGA TTTTTTTTAG TTTAATTGTG AACCTTGGCC CTTGAATTTA GATAAAATTA TACTACTCAA CACTATTCTA AATTGTCCTA TGAACTAGTG ACATAAATCA AATTTAACCT AATAAGTTAT TTTTTTTTTT TAAAAAAGTG AACACTCAAT AGTGATGTGT TGTGAACGAG TTTTAAACTT GGAACAGCTC ATCTCGAGAT TCAAGATGAA ATCAATATTT GAGACGACTT TACAATGCAT AAGCCTCTCT ACTGACAATC CCTTATTACA TTTAGTAAAT TAATTGAATA GATAAATAAT TTCAGAAGAA AAAGTAATTG AATATGTCCA ACTGGAATCA TAACTTAGAT TAAATATTCG AACTCAGCTT GTAAAGGATA AGAATCCACC TTGACTTCAT CGAAATGAAA GATTCCCTGA TATAAAGGAG CGGTTTAGCC GCTGTATCGA CAATAATGAA CATTTCAGAT AATTACAACT CAACCCGTTA ACGTTTTTTA CTTTAGCTAT CACACCCCAT ATATCACAGT TGTTACAGCC GCCCCCTTTG TATTAACAAC AAAACAAGCA GATTTTTTCA TAGGGTCCAC TCATACACTC ATAGAGACCA AAAAACAAAA CTTGGTGATT GGTTTAGCTA ACGAAAACAC CCTTCTAGAT GAGATAAACC ACCCAAAATG CCATCCACTT TAAATCTCCA ACAAACTTAT TTATTGTCTC ATAGGCACTG TGTACGGCGT AGTGTAAGTC ATCTAGTATT AGTAACAAGT GTGGTTTTTA GATTTCTTAC CCAGATTATC TTTTCATAAC AATGTATGAT ATACATTTAA ATCTAAAATA TAAAAGACGG ACGATGAGCC GATGACCGAA TATGTAAGTT TAATTTATTA TTAAGAAAAT GACGGATAGG ACAGAGACAT ACAATTATTG TAGGGTAATC AATTATAATA ATCTTTTTGG TTTCTCAATA GTTAAAAACG AATAATTTAT AAACTAGAGC TTAATAGTCT TTTAGTATAT GATATAATCA CAAAAATGTA TTCGTAGAAA CGTGGAAGCT TCACCTACCT GCATTAGTTT ACTGTAATCT CCAAATTAAA CCTTTAGTTT TACTGAAAAA ATAAATAAAG AAGAAAACAG TATTTCCTTT ATTTAAGGAC
GCTGCATTGC TTGCTCAGTG ACTCAACTCA AGAGTGGTGT TGTGTGAGAG AGAGAAGAAG AAGGAGAAAG ATAAAAAAAA

Retrieve as FASTA

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGGAGGAAAAGGTGCGATGATGGTGGCGATACTCTGCCTTTGGGCACTCTCTGCAACATCAGAAGCAGTTGTAACAGAGGAGGAGCCCGGCTTGATGATGAACTTCTACAAGGACACG
TGTCCTCAGGCCGAAGACATCATCCGTGAACAAGTCAAACTCCTCTACAAACGCCACAAGAACACCGCTTTTTCTTGGCTCCGTAACATCTTCCACGACTGCGCCGTGGAGGTCCCAACT
CTCTCTCTCTCTCTTACTCTCTCTCTGTCTCTAGATCTCTCTTTCTCTCAATGATATTTCATGTTTTGCGTGATGGGATAGGATTTCTTGGATGATTTTAGTGGAAAAGTACCAATCGTT
GTGTAAAACATAGCTTAAGGTTAGAACTTTTTACTTGAAACAGAGCTAAAGATTAACTCTGTTTTGTAATACAGTCATGCGATGCGTCGCTTTTGCTTGATTCCACAAGAAGAGAGCTAG
GAGAGAAAGAACACGACAGGAGCTTCGGTCTGAGAAACTTCAGGTACATAGAGGAGATCAAGGAAGCTCTTGAGAGGGAGTGCCCTGGTGTTGTCTCTTGTTCCGACATTCTCGTCTTGT
CCGCAAGAGAAGGCATTGAAGCAGTAAGTTAAAAACAAGTCGTGCTGTTTCTTTCCCTTGTTACGAAACTGCGTATTGTTGTTTTTTTTTTTTTTTTTTCTGTGGGATGTTTTTATTAAG
TGTGTGTGTGTGTGGGATATTGTTTTGTAGGTGGGAGGACCGCATATTCCGATGAAGACAGGAAGGAGAGATGGACGTAAAAGCAGGACTGATATGCTTGAGTCTTATCTTCCCGACCAC
AACGAGAGTATCTCTGTAGTTCTTGAAAAGTTCAAATCCATCGGAATCGACACTCCCGGCCTCGTCGCTCTCCTCGGTACATTATTCTTTCTCCTCCTGAACTATCTCTCACTAGTCTCC
GTGCAAAACGTATCGCTTGAAAGTCAAAACTCTTGACCACCCAAGAAATTATTTACATATTCCAATACAAGGGTATTATCGTCAATTTTGACTCATGCATGAAAACACTCTTAGGAAGAT
TAGTGAAACGACTTGAGCTAGTCTTGTCGGCTCGCATCGGAGTATGCGATCTGAGTCGGATAAGTTGGATATTATAAGATTTTGACTTTTTTTGTTATGACACGTGCGCAGGATCTCACA
GCGTGGGAAGAACTCATTGTGTTAAGCTGGTGCACCGTTTGTACCCTGAGGTTGATCCGTCTTTGAACCCGGACCACGTTCCTCACATGCTTCACAAGTGTCCTGACTCGATCCCTGACC
CAAAAGCGGTCCAGTACGTGCGTAACGACCGTGGTACGCCCATGGTGCTAGACAACAACTACTACCGTAACATCCTGGACAACAAGGGTTTGCTCCTTGTGGACCACCAGCTCGCACACG
ACAAACGGACCAGACCAATTGTTAAGAAGATGGCTAAGGACCAGGCTTACTTCTTCAAGGAGTTCACTAGAGCGATCCAGATCTTGTCTGAGAACAATCCTTTGACTGGTTCCAAGGGTG
AGATCAGGAAACAGTGTAATCTGGCCAACAAGATCCACTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA