Entry information : TsPrx[P]17-2 (Thhalv10026826m / ThPrx17-2)
Entry ID 9832
Creation 2011-11-18 (Qiang Li)
Last sequence changes 2011-11-22 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2015-10-22 (Christophe Dunand)
Peroxidase information: TsPrx[P]17-2 (Thhalv10026826m / ThPrx17-2)
Name (synonym) TsPrx[P]17-2 (Thhalv10026826m / ThPrx17-2)
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Eutrema
Organism Thellungiella salsuginea (Eutrema salsugineum)    [TaxId: 72664 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value TsPrx[P]17-2
start..stop
S start..stop
TsPrx[P]17-1 211 2e-70 1..121 157..277
CagraPrx51 211 5e-70 1..120 204..323
CrubPrx17-1C 211 6e-70 1..120 204..323
BstrPrx70 208 1e-68 1..121 203..323
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 701211..701576 366  
join(701211..701576)


exon

Literature and cross-references TsPrx[P]17-2 (Thhalv10026826m / ThPrx17-2)
DNA ref. Phytozome 12:   scaffold_1 (701211..701576)
Protein sequence: TsPrx[P]17-2 (Thhalv10026826m / ThPrx17-2)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   121
PWM (Da):   %s   13739.58  
PI (pH):   %s   8.64
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
RLCNQSGSGK SDPAFEPIYR EKMSKLCPNG GDENVTSCMN ATSKVFGNQY FKDLFSRRGF LNSDQTLFTS PETREYVKMF GENETEFFMA FAEGMVKMGD LQSKKPGEIR LNCRVVNRKN 
S* 

Retrieve as FASTA  
Remarks Partial sequence from genomic. Incorrect prediction from phytozome (Long PS at 5' end is missing which is not found in genomic). No EST.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
AGACTCTGTA ACCAATCCGG TTCAGGAAAA TCCGACCCGG CTTTCGAACC GATTTACCGA GAGAAAATGA GCAAACTGTG TCCCAATGGA GGAGATGAAA ACGTTACAAG CTGCATGAAC  GCAACTTCTA AAGTGTTTGG TAATCAATAT TTCAAAGACT TGTTTTCTAG GAGAGGCTTT CTTAACTCTG ATCAAACATT GTTTACTTCG CCGGAGACGA GAGAGTATGT GAAAATGTTT  GGTGAGAACG AAACAGAGTT TTTCATGGCA TTTGCGGAAG GGATGGTGAA GATGGGTGAC TTGCAGTCTA AGAAACCAGG GGAGATTAGG TTAAATTGTA GAGTAGTTAA TCGGAAAAAT 
TCTTAA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
AGACTCTGTA ACCAATCCGG TTCAGGAAAA TCCGACCCGG CTTTCGAACC GATTTACCGA GAGAAAATGA GCAAACTGTG TCCCAATGGA GGAGATGAAA ACGTTACAAG CTGCATGAAC  GCAACTTCTA AAGTGTTTGG TAATCAATAT TTCAAAGACT TGTTTTCTAG GAGAGGCTTT CTTAACTCTG ATCAAACATT GTTTACTTCG CCGGAGACGA GAGAGTATGT GAAAATGTTT  GGTGAGAACG AAACAGAGTT TTTCATGGCA TTTGCGGAAG GGATGGTGAA GATGGGTGAC TTGCAGTCTA AGAAACCAGG GGAGATTAGG TTAAATTGTA GAGTAGTTAA TCGGAAAAAT 
TCTTAA 

Retrieve as FASTA