Entry information : TsPrx[P]62 (Thhalv10028309m)
Entry ID 9835
Creation 2011-11-18 (Qiang Li)
Last sequence changes 2011-11-29 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2016-01-04 (Christophe Dunand)
Peroxidase information: TsPrx[P]62 (Thhalv10028309m)
Name (synonym) TsPrx[P]62 (Thhalv10028309m)
Class Class III peroxidase     [Orthogroup: Prx005]*
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Eutrema
Organism Thellungiella salsuginea (Eutrema salsugineum)    [TaxId: 72664 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value TsPrx[P]62
start..stop
S start..stop
AalpPrx62 366 9e-129 4..249 79..317
BstrPrx31 363 6e-128 4..249 79..317
BrPrx62-1Aa_other 363 1e-127 4..249 79..317
CagraPrx25 360 2e-126 4..249 79..317
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 4225437..4225603 167 N° 2 4228246..4228371 126 N° 3 4228408..4228428 21 N° 4 4228531..4228960 430
join(4225437..4225603,4228246..4228371,4228408..4228428,4228531..4228960)


exon

Literature and cross-references TsPrx[P]62 (Thhalv10028309m)
DNA ref. Phytozome 12:   scaffold_14 (4225437..4228960)
Protein sequence: TsPrx[P]62 (Thhalv10028309m)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   247
PWM (Da):   %s   26517.32  
PI (pH):   %s   9.54
Sequence 290
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GGESGPNTERTAGANFNLHRFEVIDDARxQLEAASPFVSCADILTLAARDSVLLVSKGQSWQVPTGRRD*RVSFSMSVDNLPSPSDSVAVQQRKFAAFKLKIMDFVNLIGGHTIGTAVPVCGFFTKRIFNTTGNTADPTMDQTFLPQLQRLCPQNGDxASRRMDLDAGMAILNFDTSFFNNLSRGRGILQSDQILWTNPTTR*LxSIVQEFMASRGNFNAQFAKSMVKMSNIGVKTGANGEIRRVCSAI

Retrieve as FASTA  
Remarks Pseudogene from genomic. Incorrect prediction from phytozome (Long 5' end and PS in frame are missing which have been no found in genomic yet. Stop in frame.). No EST.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GTGGTGAATCGGGACCTAACACTGAAAGAACCGCTGGTGCAAACTTTAACCTCCATCGTTTTGAGGTCATTGACGATGCCAGACGNCAGCTTGAGGCGGCAAGTCCTTTTGTCTCCTGTG
CCGATATTTTAACCTTAGCGGCTCGTGATTCTGTCCTCCTCGTAAG
TATACTTATACAAATATATATTATACAAAAGAGAACTAAAGAACTACATGTCTTGAAGGTTTTAAACGCCATTT
TTTTTTTGCGTTTGGGTTTAGATACGAACTAGAAATAAAAAAAAATTATTTTCTTCTCAAAAATTATTTCACAACATATACGCAGGACCAGCCCAGAGCATAGACGAAGTAGGCGACGGA
TTAGACCATCCAATTTACGGGAGCATATTTTGGTTAATTTTTTTTTTGTACAGAAATTATATATATATATATGTATATATATATAAACAAATTTAAAAGATTTTTTATAAGACAATAATA
TTTGTAAATTTTTTTGTAATGTTTATGAACTTTTCTCTAAAAAAATATTGGTTAGAAGGGCAACAAATTATATTTTAGAAAGAAAATAGAATTTGTAGACTTGAAGGTTTCTTTAATGAA
TGTTATGCAGATATAGTTGGTGATGATCTGTTTATGGAATTAGAAATTCTCCGAGAATTAATACCAAATGAAGTTGGGAAACTTATTGAAGTGCTTGATTTTTTGAAACAAATGGAAAAC
ACAGAAGTTTCATATCGCATATTGTTGACAGTTCTAGTATCGGTTGCTACTGCTGAAAGAAGTTTTTCGAAGTTAAAGCTGATAAAAATTATTTGCGATCTACCAAGAACGATTAAATGA
ACTAACTTTGTTATCTATTGAGACAGCTATGTTGAAAAACTCGATTATGAGAGTTTAATAAACGATTTTGTAGGGAAAAAATACAAAAATGACCATATTTAATAATAAAATATTAGTTTT
ATTGTGTTTTTTTGTATTTTTATAAACTATTTATGGAGTTGAAATATTTTATGATTTTTTCTTTTTTTTGTTTTTGTATTATTTGTTATTTTGAAAAAAAAAATTTTAAAAAAATTATAT
TTAAAATTTTAGATTATAGCATTTAAATTTTAGACCAGAGCATTTAAATTGATTAATCCGGCACTGCATATACGCCTAAATGCAAACAGTGTGTTTTTTTGTTTACCGTTTATGTTTAGA
ATTATAAACTGAAAATTAACCTAAAAATTGTTGATTCCTATGAAAAAAGATACACTACATGTACGTTAAACCATAAATATGGCCTTCGAAATACATCGAAAGAGATTTTAATCAAACATT
ACGATTAACATTTTACGTAGCGAAAAAAAGCCTTTGAGAGGCGATTCCCAGATCTACTTTTATTTTCCTTGCCGACAACAAAAAAAACATCTTCGATCTTCCTCTCCGGCGCGCGTGGTG
GCTCACCGTCGCCGGAGGAGGGACCACGTTGACCTCCTCTTTCATTTGGTTGACTTGTTGTTGTGCTTGGCCGTTGGCTCGGTTGTGGTGTTAAAGTGAAGTTCTCCATCTCCAGCGTGT
GTTTCTGGATCGACGGCGGCAGAGCCTCAGCGGCGTTGCTGGGGTTGTGGTGGTGGAAGGCTATCTCCTCGTGGTCATGTGTCTCTCCTCTGTTCGCCTCTTTCTTTGCTGGCGGTTTTC
TTCTCTTTGGTGCTCACCGGCGTTTTCCTCCGGCGGTCTCCATCGGCTTTTCTTTGAGAGTCCTCGTCGCCGGTGACGTGCTCTCTGACTTTCCTCGGTGGTGATGCTCGTCTCTCCCTG
TTTAAAGTTCCACTCTGCCTTGTTTTGCATATAGTGGTGTTCCCAAGGTGGAGGTGTGGTGGCGATGTAAGCTCTGGTCTCCTCGGCTACGGCGGCGGTGGTTTGGACCTCGAGGACGGG
TTCAATCTCTGGTTCGGTATCTCAGGAGATGTTTTGCTTGTGGCTGGCCTCGGAGTGGTGGCTCTCGTTTTCCCGGCGTGCGCGGCTCCACCTGCTGTGTTTCTTGGCGGTGGCTCTAGG
CGGGTGGCTCAGCGGCAGTTTCTCTCGGTTCGTCGGAGAAGCTCCGGCCGGTGCCGTCTTTTCACCGTTGTGGCTCAGGTTTTGCGGTAGGTGTGTGTGCTTGTTCTCGGCATTTTTTCA
GCAGCTTCGCAGATTGGTCTTCGTCTTGGTTCGTGATGGCTCCGACTTAGTAGTTCGGTGTAGATGGTGGAGCGTCTCGAGACGTGTATTGTAGAGGTGCCGGTTTGTTGTTCGGTTAGG
TTGCAACTGTGGAGGTTGGTCCTTATGGAGATTTCGGTTTCTACGGGAATGATTTTCGGAAGTGACCTCTCCGATTACCGCTCAGACTTCCTTGTCACCAGTTGTATTTTAGTCCGTTAT
GCATTCCGGAGATTGCGTTAGTTCTCGGAGAAGCTGTAGGCGTCTCCTTCCGGCGGTTGGAGGATGCCTCGGATTGATGCTCGTGGCAACTATGATGTGAACTCCAGCTCTTTGAGCTGC
AGCAAATACGGGATGGTCCGTGCTTTAGCACGTGATTGCTGCTTTCTCGTCTTGTTTTGCTTCGGTTTTATCTTTTTTGTTTCACTTACCGGTTCTTTACCTTTCTTTGTGTTTTTGTTG
CTTCAATGTCGGTTTTCGTTTGTCGTAGATTTTAGTTTTCTGCTTTCTTTGTCGTACCTCTGTATTCTGTAAAAAATTTGAAAAAATTTGGTATAAAATTTAACATTTAACCAAAAAAAA
AAAAAACATTTTACTTAGCTTTGCATGGGTGCATGCATGTAGACGTACGAAAGGACAAAGCTGGCAAGTCCCAACAGGACGTAGAGATTGACGAGTTTCCTTTTCAATGAGCGTTGATAA
TCTTCCCTCTCCAAGTGACTCTGTCGCCGTTCAACAAAGGAAATTCGCTGCTTT
CGCGATCTTGTCGCTCTCGTCGGTCAGTAATTTCACAAAACTAAAGATTATGGATTTTACAAACTA
TTTTCAAATTATAATAGAGCTAATTGATTAGTTTAGATGGAAACAACAAACGTTTTACGTGGATCAGAATATTAACAATATTATATGGATATATGTAAATTTAATAGGAGGACACACGAT
TGGAACAGCTGTGCCTGTGTGTGGCTTCTTTACGAAAAGAATATTTAATACTACCGGAAACACAGCAGATCCAACCATGGACCAAACATTCCTACCACAACTTCAAAGACTTTGTCCCCA
AAACGGTGATACNGCATCTAGGCGCATGGATCTTGACGCTGGAATGGCAATACTTAATTTTGACACTTCCTTCTTTAACAATCTCAGCCGTGGCAGAGGCATTCTTCAATCCGATCAGAT
TCTTTGGACTAATCCAACGACTAGATGACTAGANTCTATCGTGCAAGAGTTTATGGCTTCTAGAGGCAACTTCAATGCTCAGTTTGCGAAGTCGATGGTTAAAATGAGTAATATTGGTGT
GAAAACAGGGGCAAATGGTGAAATTCGTAGGGTTTGTTCAGCT

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GTGGTGAATCGGGACCTAACACTGAAAGAACCGCTGGTGCAAACTTTAACCTCCATCGTTTTGAGGTCATTGACGATGCCAGACGNCAGCTTGAGGCGGCAAGTCCTTTTGTCTCCTGTG
CCGATATTTTAACCTTAGCGGCTCGTGATTCTGTCCTCCTCGTAAG
GAAAGGACAAAGCTGGCAAGTCCCAACAGGACGTAGAGATTGACGAGTTTCCTTTTCAATGAGCGTTGATAATC
TTCCCTCTCCAAGTGACTCTGTCGCCGTTCAACAAAGGAAATTCGCTGCTTT
AAAACTAAAGATTATGGATTTTGTAAATTTAATAGGAGGACACACGATTGGAACAGCTGTGCCTGTGT
GTGGCTTCTTTACGAAAAGAATATTTAATACTACCGGAAACACAGCAGATCCAACCATGGACCAAACATTCCTACCACAACTTCAAAGACTTTGTCCCCAAAACGGTGATACNGCATCTA
GGCGCATGGATCTTGACGCTGGAATGGCAATACTTAATTTTGACACTTCCTTCTTTAACAATCTCAGCCGTGGCAGAGGCATTCTTCAATCCGATCAGATTCTTTGGACTAATCCAACGA
CTAGATGACTAGANTCTATCGTGCAAGAGTTTATGGCTTCTAGAGGCAACTTCAATGCTCAGTTTGCGAAGTCGATGGTTAAAATGAGTAATATTGGTGTGAAAACAGGGGCAAATGGTG
AAATTCGTAGGGTTTGTTCAGCT

Retrieve as FASTA