Entry information : TsPrx[P]62 (Thhalv10028309m)
Entry ID 9835
Creation 2011-11-18 (Qiang Li)
Last sequence changes 2011-11-29 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2016-01-04 (Christophe Dunand)
Peroxidase information: TsPrx[P]62 (Thhalv10028309m)
Name (synonym) TsPrx[P]62 (Thhalv10028309m)
Class Class III peroxidase     [Orthogroup: Prx005]*
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Eutrema
Organism Thellungiella salsuginea (Eutrema salsugineum)    [TaxId: 72664 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value TsPrx[P]62
start..stop
S start..stop
AalpPrx62 366 9e-129 4..249 79..317
BstrPrx31 363 6e-128 4..249 79..317
BrPrx62-1Aa_other 363 1e-127 4..249 79..317
CagraPrx25 360 2e-126 4..249 79..317
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 4225437..4225603 167 N° 2 4228246..4228371 126 N° 3 4228408..4228428 21 N° 4 4228531..4228960 430
join(4225437..4225603,4228246..4228371,4228408..4228428,4228531..4228960)


exon

Literature and cross-references TsPrx[P]62 (Thhalv10028309m)
DNA ref. Phytozome 12:   scaffold_14 (4225437..4228960)
Protein sequence: TsPrx[P]62 (Thhalv10028309m)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   247
PWM (Da):   %s   26517.32  
PI (pH):   %s   9.54
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GGESGPNTERTAGANFNLHRFEVIDDARxQLEAASPFVSCADILTLAARDSVLLVSKGQSWQVPTGRRD*RVSFSMSVDNLPSPSDSVAVQQRKFAAFKLKIMDFVNLIGGHTIGTAVPVCGFFTKRIFNTTGNTADPTMDQTFLPQLQRLCPQNGDxASRRMDLDAGMAILNFDTSFFNNLSRGRGILQSDQILWTNPTTR*LxSIVQEFMASRGNFNAQFAKSMVKMSNIGVKTGANGEIRRVCSAI

Retrieve as FASTA  
Remarks Pseudogene from genomic. Incorrect prediction from phytozome (Long 5' end and PS in frame are missing which have been no found in genomic yet. Stop in frame.). No EST.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GGTGGTGAATCGGGACCTAACACTGAAAGAACCGCTGGTGCAAACTTTAACCTCCATCGTTTTGAGGTCATTGACGATGCCAGACGNCAGCTTGAGGCGGCAAGTCCTTTTGTCTCCTGT
GCCGATATTTTAACCTTAGCGGCTCGTGATTCTGTCCTCCTCGTAAG
TATACTTATACAAATATATATTATACAAAAGAGAACTAAAGAACTACATGTCTTGAAGGTTTTAAACGCCATT
TTTTTTTTGCGTTTGGGTTTAGATACGAACTAGAAATAAAAAAAAATTATTTTCTTCTCAAAAATTATTTCACAACATATACGCAGGACCAGCCCAGAGCATAGACGAAGTAGGCGACGG
ATTAGACCATCCAATTTACGGGAGCATATTTTGGTTAATTTTTTTTTTGTACAGAAATTATATATATATATATGTATATATATATAAACAAATTTAAAAGATTTTTTATAAGACAATAAT
ATTTGTAAATTTTTTTGTAATGTTTATGAACTTTTCTCTAAAAAAATATTGGTTAGAAGGGCAACAAATTATATTTTAGAAAGAAAATAGAATTTGTAGACTTGAAGGTTTCTTTAATGA
ATGTTATGCAGATATAGTTGGTGATGATCTGTTTATGGAATTAGAAATTCTCCGAGAATTAATACCAAATGAAGTTGGGAAACTTATTGAAGTGCTTGATTTTTTGAAACAAATGGAAAA
CACAGAAGTTTCATATCGCATATTGTTGACAGTTCTAGTATCGGTTGCTACTGCTGAAAGAAGTTTTTCGAAGTTAAAGCTGATAAAAATTATTTGCGATCTACCAAGAACGATTAAATG
AACTAACTTTGTTATCTATTGAGACAGCTATGTTGAAAAACTCGATTATGAGAGTTTAATAAACGATTTTGTAGGGAAAAAATACAAAAATGACCATATTTAATAATAAAATATTAGTTT
TATTGTGTTTTTTTGTATTTTTATAAACTATTTATGGAGTTGAAATATTTTATGATTTTTTCTTTTTTTTGTTTTTGTATTATTTGTTATTTTGAAAAAAAAAATTTTAAAAAAATTATA
TTTAAAATTTTAGATTATAGCATTTAAATTTTAGACCAGAGCATTTAAATTGATTAATCCGGCACTGCATATACGCCTAAATGCAAACAGTGTGTTTTTTTGTTTACCGTTTATGTTTAG
AATTATAAACTGAAAATTAACCTAAAAATTGTTGATTCCTATGAAAAAAGATACACTACATGTACGTTAAACCATAAATATGGCCTTCGAAATACATCGAAAGAGATTTTAATCAAACAT
TACGATTAACATTTTACGTAGCGAAAAAAAGCCTTTGAGAGGCGATTCCCAGATCTACTTTTATTTTCCTTGCCGACAACAAAAAAAACATCTTCGATCTTCCTCTCCGGCGCGCGTGGT
GGCTCACCGTCGCCGGAGGAGGGACCACGTTGACCTCCTCTTTCATTTGGTTGACTTGTTGTTGTGCTTGGCCGTTGGCTCGGTTGTGGTGTTAAAGTGAAGTTCTCCATCTCCAGCGTG
TGTTTCTGGATCGACGGCGGCAGAGCCTCAGCGGCGTTGCTGGGGTTGTGGTGGTGGAAGGCTATCTCCTCGTGGTCATGTGTCTCTCCTCTGTTCGCCTCTTTCTTTGCTGGCGGTTTT
CTTCTCTTTGGTGCTCACCGGCGTTTTCCTCCGGCGGTCTCCATCGGCTTTTCTTTGAGAGTCCTCGTCGCCGGTGACGTGCTCTCTGACTTTCCTCGGTGGTGATGCTCGTCTCTCCCT
GTTTAAAGTTCCACTCTGCCTTGTTTTGCATATAGTGGTGTTCCCAAGGTGGAGGTGTGGTGGCGATGTAAGCTCTGGTCTCCTCGGCTACGGCGGCGGTGGTTTGGACCTCGAGGACGG
GTTCAATCTCTGGTTCGGTATCTCAGGAGATGTTTTGCTTGTGGCTGGCCTCGGAGTGGTGGCTCTCGTTTTCCCGGCGTGCGCGGCTCCACCTGCTGTGTTTCTTGGCGGTGGCTCTAG
GCGGGTGGCTCAGCGGCAGTTTCTCTCGGTTCGTCGGAGAAGCTCCGGCCGGTGCCGTCTTTTCACCGTTGTGGCTCAGGTTTTGCGGTAGGTGTGTGTGCTTGTTCTCGGCATTTTTTC
AGCAGCTTCGCAGATTGGTCTTCGTCTTGGTTCGTGATGGCTCCGACTTAGTAGTTCGGTGTAGATGGTGGAGCGTCTCGAGACGTGTATTGTAGAGGTGCCGGTTTGTTGTTCGGTTAG
GTTGCAACTGTGGAGGTTGGTCCTTATGGAGATTTCGGTTTCTACGGGAATGATTTTCGGAAGTGACCTCTCCGATTACCGCTCAGACTTCCTTGTCACCAGTTGTATTTTAGTCCGTTA
TGCATTCCGGAGATTGCGTTAGTTCTCGGAGAAGCTGTAGGCGTCTCCTTCCGGCGGTTGGAGGATGCCTCGGATTGATGCTCGTGGCAACTATGATGTGAACTCCAGCTCTTTGAGCTG
CAGCAAATACGGGATGGTCCGTGCTTTAGCACGTGATTGCTGCTTTCTCGTCTTGTTTTGCTTCGGTTTTATCTTTTTTGTTTCACTTACCGGTTCTTTACCTTTCTTTGTGTTTTTGTT
GCTTCAATGTCGGTTTTCGTTTGTCGTAGATTTTAGTTTTCTGCTTTCTTTGTCGTACCTCTGTATTCTGTAAAAAATTTGAAAAAATTTGGTATAAAATTTAACATTTAACCAAAAAAA
AAAAAAACATTTTACTTAGCTTTGCATGGGTGCATGCATGTAGACGTACGAAAGGACAAAGCTGGCAAGTCCCAACAGGACGTAGAGATTGACGAGTTTCCTTTTCAATGAGCGTTGATA
ATCTTCCCTCTCCAAGTGACTCTGTCGCCGTTCAACAAAGGAAATTCGCTGCTTT
CGCGATCTTGTCGCTCTCGTCGGTCAGTAATTTCACAAAACTAAAGATTATGGATTTTACAAACT
ATTTTCAAATTATAATAGAGCTAATTGATTAGTTTAGATGGAAACAACAAACGTTTTACGTGGATCAGAATATTAACAATATTATATGGATATATGTAAATTTAATAGGAGGACACACGA
TTGGAACAGCTGTGCCTGTGTGTGGCTTCTTTACGAAAAGAATATTTAATACTACCGGAAACACAGCAGATCCAACCATGGACCAAACATTCCTACCACAACTTCAAAGACTTTGTCCCC
AAAACGGTGATACNGCATCTAGGCGCATGGATCTTGACGCTGGAATGGCAATACTTAATTTTGACACTTCCTTCTTTAACAATCTCAGCCGTGGCAGAGGCATTCTTCAATCCGATCAGA
TTCTTTGGACTAATCCAACGACTAGATGACTAGANTCTATCGTGCAAGAGTTTATGGCTTCTAGAGGCAACTTCAATGCTCAGTTTGCGAAGTCGATGGTTAAAATGAGTAATATTGGTG
TGAAAACAGGGGCAAATGGTGAAATTCGTAGGGTTTGTTCAGCT

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GGTGGTGAATCGGGACCTAACACTGAAAGAACCGCTGGTGCAAACTTTAACCTCCATCGTTTTGAGGTCATTGACGATGCCAGACGNCAGCTTGAGGCGGCAAGTCCTTTTGTCTCCTGT
GCCGATATTTTAACCTTAGCGGCTCGTGATTCTGTCCTCCTCGTAAG
GAAAGGACAAAGCTGGCAAGTCCCAACAGGACGTAGAGATTGACGAGTTTCCTTTTCAATGAGCGTTGATAAT
CTTCCCTCTCCAAGTGACTCTGTCGCCGTTCAACAAAGGAAATTCGCTGCTTT
AAAACTAAAGATTATGGATTTTGTAAATTTAATAGGAGGACACACGATTGGAACAGCTGTGCCTGTG
TGTGGCTTCTTTACGAAAAGAATATTTAATACTACCGGAAACACAGCAGATCCAACCATGGACCAAACATTCCTACCACAACTTCAAAGACTTTGTCCCCAAAACGGTGATACNGCATCT
AGGCGCATGGATCTTGACGCTGGAATGGCAATACTTAATTTTGACACTTCCTTCTTTAACAATCTCAGCCGTGGCAGAGGCATTCTTCAATCCGATCAGATTCTTTGGACTAATCCAACG
ACTAGATGACTAGANTCTATCGTGCAAGAGTTTATGGCTTCTAGAGGCAACTTCAATGCTCAGTTTGCGAAGTCGATGGTTAAAATGAGTAATATTGGTGTGAAAACAGGGGCAAATGGT
GAAATTCGTAGGGTTTGTTCAGCT

Retrieve as FASTA