Entry information : GmAPx[P]24
Entry ID 9858
Creation 2011-11-29 (Qiang Li)
Last sequence changes 2011-12-14 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2016-01-12 (Christophe Dunand)
Peroxidase information: GmAPx[P]24
Name GmAPx[P]24
Class Ascorbate peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Glycine
Organism Glycine max (soybean)    [TaxId: 3847 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GmAPx[P]24
start..stop
S start..stop
GmAPx[P]13 102 4.09e-31 1..59 11..69
GmAPx[P]15 98 1.4e-29 1..59 23..81
GmAPx[P]11 97 6.69e-29 1..59 42..100
GmAPx[P]23 69 3.12e-18 19..59 1..41
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '9858' 'complement(join(17430256..17430432))' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 17430256..17430432 175  
complement(join(17430256..17430432))


exon

Literature and cross-references GmAPx[P]24
DNA ref. Phytozome 12:   Gm15 (17430432..17430256)
Protein sequence: GmAPx[P]24
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   58
PWM (Da):   %s   6154.13 Transmb domain:   %s   o20-41i
PI (pH):   %s   4.07
Sequence
Send to BLAST
Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

GATQGGVPYF ELR*FLPGDD FFVFGVCALN AMFVLTQLAG VVDVEVTGGL EVPFHPRRE 

Retrieve as FASTA  
Remarks Pseudogene from genomic (5' end and 3' end are missing; stop in frame). No prediction from phytozome.
DNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GGAGCCACTC AAGGCGGAGT TCCCTATTTT GAGCTACGCT GATTTCTACC CGGTGATGAT TTTTTTGTCT TTGGTGTTTG TGCGCTTAAT GCTATGTTTG TGTTGACGCA GTTGGCTGGC 
GTTGTTGACG TTGAGGTCAC GGGTGGACTT GAAGTTCCAT TCCACCCTCG AAGAGAG 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GGAGCCACTC AAGGCGGAGT TCCCTATTTT GAGCTACGCT GATTTCTACC CGGTGATGAT TTTTTTGTCT TTGGTGTTTG TGCGCTTAAT GCTATGTTTG TGTTGACGCA GTTGGCTGGC 
GTTGTTGACG TTGAGGTCAC GGGTGGACTT GAAGTTCCAT TCCACCCTCG AAGAGAG 

Retrieve as FASTA