Entry information : SiPrx[P]179
Entry ID 9935
Creation 2011-11-25 (Qiang LI)
Last sequence changes 2011-12-14 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2011-12-14 (Qiang Li)
Peroxidase information: SiPrx[P]179
Name SiPrx[P]179
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Setaria
Organism Setaria italica    [TaxId: 4555 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SiPrx[P]179
start..stop
S start..stop
SiPrx[P]103 246 2e-83 1..148 140..287
SbPrx103 136 7e-40 1..77 130..206
SbPrx103 49 0.00000008 112..148 313..346
SiPrx[P]181 128 1e-39 1..136 1..114
SiPrx68 135 1e-39 1..77 131..207
SiPrx68 56 0.0000000003 120..148 306..334
Literature and cross-references SiPrx[P]179
DNA ref. Phytozome 12:   scaffold_3 (14245306..14244770)
Protein sequence: SiPrx[P]179
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   148
PWM (Da):   %s   14890.42  
PI (pH):   %s   4.5
Sequence
Send to BLAST
Send to Peroxiscan
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ANSLRGFEVI DAIKAELERE CPETVSCAKL LAIAARDSVV VSGGPSWEVE AGQKDVRTIS LQGANVNLPT LTSSVATxRA EVQERWPLHQ GHDRPQAxAH HQQVTxSxxx PSGTAVPGVE 
DDDGVAGLVA AYAFDAxVFF RDFAESML 

Retrieve as FASTA  
Remarks Pseudogene from genomic (Both 5' end and 3' end are missing; Mismatch in frame; Gaps in frame). No prdiction from phytozome. complement(join(14244770..14244890,14244924..14245107,14245184..14245306))
DNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GCCAACTCGC TCAGGGGCTT CGAGGTCATC GATGCTATAA AGGCTGAGTT GGAGCGAGAG TGCCCGGAGA CAGTCTCCTG CGCCAAGCTC CTCGCCATCG CTGCCCGTGA CTCCGTCGTG  GTGGTAATAA TCACATACAT ACATGCATGC AATTATCATC CATAAGCATC TAGATGATCA TGATTGTCGG TGCATTCAGT CGGGCGGGCC GAGCTGGGAG GTAGAGGCCG GCCAGAAGGA  CGTCCGCACG ATAAGCCTTC AGGGCGCCAA CGTCAACCTC CCGACGCTGA CGTCCAGCGT TGCTACCCTn CGTGCAGAAG TTCAGGAACG TTGGCCTCTC CACCAAGGAC ATGATCGACC  TCAGGCGCnn GCGCACCATC AGCAAGGCAT GGATGGTGCA CAACCGTCCA ACCAGGCGCT AACGnnnTCG nnnnnnnnnC CGTCAGGTAC AGCCGTGCCC GGGGTAGAGG ATGATGACGG 
AGTCGCCGGC CTTGTGGCCG CCTACGCGTT CGACGCCCTn GTCTTCTTCC GGGACTTTGC GGAGTCCATG CTC 

Retrieve as FASTA