Entry information : SiPrx175
Entry ID 9938
Creation 2011-11-25 (Qiang LI)
Last sequence changes 2011-12-12 (Qiang Li)
Sequence status partial
Reviewer Christophe Dunand
Last annotation changes 2012-04-27 (Christophe Dunand)
Peroxidase information: SiPrx175
Name SiPrx175
Class Class III peroxidase     [Orthogroup: Prx024]*
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Setaria
Organism Setaria italica    [TaxId: 4555 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SiPrx175
start..stop
S start..stop
SiPrx158 441 4e-158 1..253 77..329
SbPrx11 424 2e-151 1..253 78..330
SiPrx156 404 1e-143 1..253 79..330
OsPrx121 386 1e-136 1..253 77..328
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 36479504..36480265 762  
complement(join(36479504..36480265))


exon

Literature and cross-references SiPrx175
DNA ref. Phytozome 12:   scaffold_9 (36480265..36479504)
Protein sequence: SiPrx175
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   253
PWM (Da):   %s   27126.7  
PI (pH):   %s   8.64
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GCDGGLLIDG PGTEKTAGPN LSVKGYDLIA AIKTELERRC PGVVSCSDIE ILATRDAVAL AGGPAYAVRT GRRDRRQSRA SDVRLPGADY TAAQTTAYFS MLGMSPFETM VLLGAHTVGA  THCSAIKNSR LYGYGGRPGA TDPSMDPAVA SVYKKYVCPN VPSSDSNMVF LDDQWSALKV DNHYYRNLQL RRRVLPCDQN LYNDGPTKRI IDQLATNNGL FLSAFGQVLA KLSEVGVLTG 
TQGEIRKVCN KFN 

Retrieve as FASTA  
Remarks Partial sequence from genomic (5' end is missing). No prediction from phytozome.
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GGATGCGACG GCGGTCTGCT CATCGACGGC CCCGGCACGG AGAAGACGGC GGGGCCGAAC CTGAGCGTCA AGGGCTACGA CCTCATCGCG GCCATCAAGA CGGAGCTGGA GCGGAGGTGC  CCCGGCGTCG TGTCCTGCTC CGACATCGAG ATCCTCGCCA CCCGGGACGC GGTCGCGCTG GCCGGCGGGC CGGCGTACGC AGTGCGCACG GGGCGCAGGG ACCGCCGCCA GTCGCGGGCC  TCCGACGTGC GGCTCCCGGG AGCCGACTAC ACGGCGGCGC AGACGACCGC TTATTTCTCC ATGCTGGGGA TGAGTCCGTT CGAGACGATG GTGCTCCTGG GCGCGCACAC CGTGGGCGCC  ACCCACTGCA GCGCCATCAA GAACAGCCGC CTGTACGGAT ACGGCGGCCG GCCCGGCGCG ACGGACCCCA GCATGGACCC GGCCGTCGCG TCCGTGTACA AGAAGTACGT GTGCCCCAAC  GTGCCGTCGT CGGACAGCAA CATGGTGTTC CTGGACGACC AGTGGAGCGC GCTCAAGGTG GACAACCACT ACTACAGGAA CCTCCAGCTC CGCCGCCGCG TGCTCCCCTG CGACCAGAAC  CTGTACAATG ATGGCCCCAC CAAGCGGATC ATCGATCAGC TGGCCACCAA CAACGGCCTC TTCCTCTCGG CGTTCGGGCA GGTGCTCGCC AAGCTCAGCG AGGTCGGCGT CCTCACCGGC 
ACACAGGGTG AAATCCGCAA GGTCTGCAAC AAGTTCAACT GA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GGATGCGACG GCGGTCTGCT CATCGACGGC CCCGGCACGG AGAAGACGGC GGGGCCGAAC CTGAGCGTCA AGGGCTACGA CCTCATCGCG GCCATCAAGA CGGAGCTGGA GCGGAGGTGC  CCCGGCGTCG TGTCCTGCTC CGACATCGAG ATCCTCGCCA CCCGGGACGC GGTCGCGCTG GCCGGCGGGC CGGCGTACGC AGTGCGCACG GGGCGCAGGG ACCGCCGCCA GTCGCGGGCC  TCCGACGTGC GGCTCCCGGG AGCCGACTAC ACGGCGGCGC AGACGACCGC TTATTTCTCC ATGCTGGGGA TGAGTCCGTT CGAGACGATG GTGCTCCTGG GCGCGCACAC CGTGGGCGCC  ACCCACTGCA GCGCCATCAA GAACAGCCGC CTGTACGGAT ACGGCGGCCG GCCCGGCGCG ACGGACCCCA GCATGGACCC GGCCGTCGCG TCCGTGTACA AGAAGTACGT GTGCCCCAAC  GTGCCGTCGT CGGACAGCAA CATGGTGTTC CTGGACGACC AGTGGAGCGC GCTCAAGGTG GACAACCACT ACTACAGGAA CCTCCAGCTC CGCCGCCGCG TGCTCCCCTG CGACCAGAAC  CTGTACAATG ATGGCCCCAC CAAGCGGATC ATCGATCAGC TGGCCACCAA CAACGGCCTC TTCCTCTCGG CGTTCGGGCA GGTGCTCGCC AAGCTCAGCG AGGTCGGCGT CCTCACCGGC 
ACACAGGGTG AAATCCGCAA GGTCTGCAAC AAGTTCAACT GA 

Retrieve as FASTA