Entry information : VvAPx[P]08
Entry ID 9965
Creation 2011-11-25 (Qiang LI)
Last sequence changes 2012-01-05 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2016-01-17 (Christophe Dunand)
Peroxidase information: VvAPx[P]08
Name VvAPx[P]08
Class Ascorbate peroxidase     [Orthogroup: APx001]*
Taxonomy Eukaryota Viridiplantae Streptophyta Vitaceae Vitis
Organism Vitis vinifera (Grape)    [TaxId: 29760 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value VvAPx[P]08
start..stop
S start..stop
VvAPx[P]09 294 7e-105 1..148 1..148
VvAPx01 254 1e-87 1..148 103..250
VhAPx01 254 1e-87 1..148 103..250
LeAPx03 243 4e-83 1..148 103..250
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 14310901..14311344 444  
complement(join(14310901..14311344))


exon

Literature and cross-references VvAPx[P]08
DNA ref. Phytozome 12:   chr3 (14311344..14310901)
Protein sequence: VvAPx[P]08
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   145
PWM (Da):   %s   16013.06  
PI (pH):   %s   4.63
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
VAVEVTGGL* IPFHPGREDK PEPPPEGRLP DATKRCDHLR *VYATQMGLN DKDIVALSGA HTLGRCHKER SGFEGPWTSN PLIFDNSYFT ELLGEEKEGL L*LPSDKALL SDPAFCPLVE 
KHAANEDVFF EDYKEPLLKL SELGFIYA 

Retrieve as FASTA  
Remarks Pseudogene from genomic (Long 5' end is missing; Stops in frame). No prediction from phytozome.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GTTGCTGTTG AGGTCACTGG AGGGCTTTAA ATTCCTTTCC ACCCAGGGAG AGAGGACAAG CCGGAGCCAC CACCTGAGGG TCGTCTACCA GATGCCACCA AAAGATGCGA TCACTTGAGA  TAGGTGTATG CTACCCAAAT GGGTCTCAAC GACAAGGACA TCGTAGCTCT CTCTGGGGCC CACACCCTGG GAAGGTGCCA CAAGGAGCGC TCTGGATTTG AAGGACCTTG GACTTCCAAT  CCTCTGATCT TTGATAACAG CTACTTCACG GAACTCCTTG GCGAAGAAAA GGAAGGTCTT CTATAGCTGC CAAGTGATAA AGCTCTTCTC TCAGACCCAG CCTTCTGTCC TCTTGTCGAG 
AAACATGCCG CTAATGAAGA TGTCTTCTTT GAGGATTACA AAGAACCCCT TTTGAAACTC TCTGAGCTGG GATTTATTTA TGCT 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GTTGCTGTTG AGGTCACTGG AGGGCTTTAA ATTCCTTTCC ACCCAGGGAG AGAGGACAAG CCGGAGCCAC CACCTGAGGG TCGTCTACCA GATGCCACCA AAAGATGCGA TCACTTGAGA  TAGGTGTATG CTACCCAAAT GGGTCTCAAC GACAAGGACA TCGTAGCTCT CTCTGGGGCC CACACCCTGG GAAGGTGCCA CAAGGAGCGC TCTGGATTTG AAGGACCTTG GACTTCCAAT  CCTCTGATCT TTGATAACAG CTACTTCACG GAACTCCTTG GCGAAGAAAA GGAAGGTCTT CTATAGCTGC CAAGTGATAA AGCTCTTCTC TCAGACCCAG CCTTCTGTCC TCTTGTCGAG 
AAACATGCCG CTAATGAAGA TGTCTTCTTT GAGGATTACA AAGAACCCCT TTTGAAACTC TCTGAGCTGG GATTTATTTA TGCT 

Retrieve as FASTA