Entry information : VvAPx[P]09
Entry ID 9966
Creation 2011-11-25 (Qiang LI)
Last sequence changes 2012-01-05 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2012-01-05 (Qiang Li)
Peroxidase information: VvAPx[P]09
Name VvAPx[P]09
Class Ascorbate peroxidase     [Orthogroup: APx001]*
Taxonomy Eukaryota Viridiplantae Streptophyta Vitaceae Vitis
Organism Vitis vinifera (Grape)    [TaxId: 29760 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value VvAPx[P]09
start..stop
S start..stop
VvAPx[P]08 294 7e-105 1..148 1..148
VvAPx01 256 2e-88 1..148 103..250
VhAPx01 256 2e-88 1..148 103..250
AfpAPx01 244 2e-83 1..145 103..247
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 2514731..2515174 444  
join(2514731..2515174)


exon

Literature and cross-references VvAPx[P]09
DNA ref. Phytozome 12:   chr19 (2514731..2515174)
Protein sequence: VvAPx[P]09
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   146
PWM (Da):   %s   16176.09  
PI (pH):   %s   4.56
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
VAVEVTGGLE IPFHPGREDK PEPPPEGRLP DATKRCDHLR *VYATQMGLN DKDIVAFSGA HTLGRCHKER SGFEGPWTSN PLIFDNSYFT ELLGEEKEGL L*LPSDKALL SDPAFCPLVE 
KHAANEDVFF EDYKEPLLKL SELGFIYA 

Retrieve as FASTA  
Remarks Pseudogene from genomic (Long 5' end is missing; Stops in frame). No prediction from phytozome.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GTTGCTGTTG AGGTCACTGG AGGGCTTGAA ATTCCTTTCC ACCCAGGGAG AGAGGACAAG CCGGAGCCAC CACCTGAGGG TCGTCTGCCA GATGCCACCA AAAGATGCGA TCACTTGAGA  TAGGTGTATG CTACCCAAAT GGGTCTCAAC GACAAGGACA TCGTAGCTTT CTCTGGGGCC CACACCCTGG GAAGGTGCCA CAAGGAGCGC TCTGGATTTG AAGGACCTTG GACTTCCAAT  CCTCTGATCT TTGATAACAG CTACTTCACG GAACTCCTTG GCGAAGAAAA GGAAGGTCTT CTATAGCTGC CAAGTGATAA AGCTCTTCTC TCAGACCCAG CCTTCTGTCC TCTTGTCGAG 
AAACATGCCG CTAATGAAGA TGTCTTCTTT GAGGATTACA AAGAACCCCT TTTGAAACTC TCTGAGCTGG GATTTATTTA TGCT 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GTTGCTGTTG AGGTCACTGG AGGGCTTGAA ATTCCTTTCC ACCCAGGGAG AGAGGACAAG CCGGAGCCAC CACCTGAGGG TCGTCTGCCA GATGCCACCA AAAGATGCGA TCACTTGAGA  TAGGTGTATG CTACCCAAAT GGGTCTCAAC GACAAGGACA TCGTAGCTTT CTCTGGGGCC CACACCCTGG GAAGGTGCCA CAAGGAGCGC TCTGGATTTG AAGGACCTTG GACTTCCAAT  CCTCTGATCT TTGATAACAG CTACTTCACG GAACTCCTTG GCGAAGAAAA GGAAGGTCTT CTATAGCTGC CAAGTGATAA AGCTCTTCTC TCAGACCCAG CCTTCTGTCC TCTTGTCGAG 
AAACATGCCG CTAATGAAGA TGTCTTCTTT GAGGATTACA AAGAACCCCT TTTGAAACTC TCTGAGCTGG GATTTATTTA TGCT 

Retrieve as FASTA