Entry information : SiAPx[P]09
Entry ID 9986
Creation 2011-12-14 (Qiang Li)
Last sequence changes 2011-12-14 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Qiang Li
Last annotation changes 2011-12-15 (Qiang Li)
Peroxidase information: SiAPx[P]09
Name SiAPx[P]09
Class Ascorbate peroxidase     [Orthogroup: APx002]*
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Setaria
Organism Setaria italica    [TaxId: 4555 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SiAPx[P]09
start..stop
S start..stop
SiAPx06 290 1.45e-100 1..142 27..168
TaAPx03-1A 263 5.46e-90 1..142 27..169
HvAPx05 261 2.13e-89 1..142 27..169
ZmAPx06 261 3.76e-89 1..142 28..170
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '9986' 'join(24019581..24019697,24020115..24020235,24020309..24020409,24020502..24020594)' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 24019581..24019697 115 N° 2 24020115..24020235 119 N° 3 24020309..24020409 99 N° 4 24020502..24020594 91
join(24019581..24019697,24020115..24020235,24020309..24020409,24020502..24020594 )


exon

Literature and cross-references SiAPx[P]09
DNA ref. Phytozome 12:   scaffold_3 (24019581..24020594)
Protein sequence: SiAPx[P]09
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   143 (327)
PWM (Da):   %s   15195.88 (34143.9)  
PI (pH):   %s   7.44 (4.32) Peptide Signal:   %s   cut: 32 range:32-358
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
QELGRRPLSSAAGDAAAELRGAREDVKQLLKTTSCHPILVRLGWHDAGTYDKNIAEWPKCGGANGSLRFEIELKHGANAGLVNASKLIQPIKDKFSGVTYADLFQLASATAIEAGGPKIPMIYGRIDITAPEQCPPEGRLPG*

Retrieve as FASTA  
Remarks Pseudogene from genomic (Both 5' and 3' ends are missing which is located in the intron of 9552: SiPrx57 (Si011734m)). No prediction from phytozome.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
CAGGAGCTCGGGCGGCGTCCGTTGAGCTCGGCGGCAGGGGATGCGGCGGCCGAGCTGAGGGGCGCGCGGGAGGACGTCAAGCAGCTGCTCAAGACCACTTCCTGCCATCCCATTCTGTGG
TACGGTATTTCTCCTCCTGCAAATTCCTAGGCTCCATATGGGTTGAGCAGACAAGAATTCCTAGGCTCCACGGTAGGGGGCATCTCCCCCTCCGGTCGCGGTTTTTTTTTGGGTTGAGCA
GACAAGTGATTGTGTTCGGCTTGATGGAAATCTGCATCTGTACAAAAGTTAAGTTTTTTTTTTCTCACGTTTCGTGCAATTGATGAACCAATACTGCGTCCTTTTGTTTTGGGTAAGGAA
CGGACTCGTGCGATTTAGTTGGCAGATGTACTGGTCTGTTTATGCTAGATCAATTTTGATCTTTGTGCTTTGTGTGCACTATTTTTTGCATCTTCTCGATTCAGCATTAGATGATTCAGC
CTTTGAGTTGCCTAGATACGAGTATGGCTTTTGTGATGTTTTATCGTTTGGTTCAGGTTCGATTGGGTTGGCATGATGCTGGTACCTATGACAAGAACATTGCTGAGTGGCCCAAGTGCG
GTGGAGCTAATGGTAGCTTGAGATTTGAAATTGAGTTAAAGCACGGGGCTAATGCTG
TGGTAGTGCTTCTCCTCCATTAATCATCTGTAGCTTCATGATGAATTGCCATTCTTATATTTA
GTTCTGCGACAGGTCTTGTGAATGCTTCTAAGCTGATCCAACCGATCAAGGACAAGTTTTCAGGTGTCACATATGCAGATCTCTTTCAGCTTGCGAGTGCCACAGCCATTGAGAGGTCTG
TTATTGTACTTCAGCTTTAAGTGAGATGATTGTTGGAAAATGCTTCTTGTTAATAATGACTGGATGTTTTGATTTCTTTCATTTCAGGAAGCTGGTGGCCCCAAAATTCCCATGATCTAT
GGAAGGATTGACATTACTGCCCCTGAACAATGCCCACCAGAGGGGAGGCTTCCTGGTTAG

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
CAGGAGCTCGGGCGGCGTCCGTTGAGCTCGGCGGCAGGGGATGCGGCGGCCGAGCTGAGGGGCGCGCGGGAGGACGTCAAGCAGCTGCTCAAGACCACTTCCTGCCATCCCATTCTGGTT
CGATTGGGTTGGCATGATGCTGGTACCTATGACAAGAACATTGCTGAGTGGCCCAAGTGCGGTGGAGCTAATGGTAGCTTGAGATTTGAAATTGAGTTAAAGCACGGGGCTAATGCTG
GT
CTTGTGAATGCTTCTAAGCTGATCCAACCGATCAAGGACAAGTTTTCAGGTGTCACATATGCAGATCTCTTTCAGCTTGCGAGTGCCACAGCCATTGAG
GAAGCTGGTGGCCCCAAAATT
CCCATGATCTATGGAAGGATTGACATTACTGCCCCTGAACAATGCCCACCAGAGGGGAGGCTTCCTGGTTAG

Retrieve as FASTA