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BLAST USAGE

Blastn:
Search (the selected) nucleotide database using a nucleotide query

Blastp:
Search the protein database using a protein query

tBlastn:
Search (the selected) translated nucleotide database using a protein query

BlastX:
Search the protein database using a translated nucleotide query

Please, choose a specific BLAST database:

PEP: all PEP sequences in Redoxibase
DNA: all DNA sequences in Redoxibase
cDNA: all cDNA sequences in Redoxibase
CDS: all CDS sequences in Redoxibase
Promoter: all Promoter sequences in Redoxibase
Terminator: all Terminator sequences in Redoxibase

Choose the BLAST program to run

blastn tblastn blastp blastx

NB : In case your sequence is DNA and contains ambiguous characters as [Y,R,M,K,S,W] try this page

Blast Organism masking

Subextraction of organism

Boechera stricta in selected bank

Other Organisms

Organisms:

Usage: Start typing in the text box, at least the two first characters to get organisms name suggestions

Query

Title (Optional)

Paste your sequence here (fasta or raw sequence)

ATGAGCCGTAAAATACGAGAAGATATATCGATTCGTTTGTTTGGTCCGAAAATGATCACTGTTGCATTATTTCTAGTTTTGTTTTATTTTCATGATCAGTTAGGTTATTCGGAGGCACAACTTCAGTTTGGATTCTACTCGGAAACATGCCCATCAGCAGAATCAATCGTCCGTGACGTTGTTCAGCAGGCGGTGACCAACGACCCCGGAAAGGCTGCTGTCTTACTCCGTCTCCAGTTCCACGATTGCTTCGTTGAGGTCCAATGCAAAAAAGAGAACTATTTAGTAATCATTTTCTATACTAGTCATGACATAAATTGGTTTTGGTTATATGTTGTAGGGTTGTGATGGGTCAATACTAATCAAGCATGATGGGAACGATGACGAAAGGTTTGCTGCAGGTAACGCGGGTGTGGCTGGTTTCGATGTTATAGACGAAGCCAAATCAGAGCTCGAACGTCTTTGTCCGGGCGTTGTGTCTTGCGCCGACATCGTTGCTCTTGCTGCTAGAGACGCTATTGCTGAGGTAACACTTTAATAGTTCCGTTAACCAGAAAAAAACAATTTGATAGTTCTTTATATATAGAATTTTTTTTGAATACACAGTAAATAGCTGATGTATTTATATATATATATATATGTATATATTGGGTTAAGAATATCCTTTGATATTAAATATTAACTTATTAGGCAAAAGGACCATCTTATGAGGTTCCAACCGGTCGGAGAGACGGTCGGATTGCAAATGTTGGTCACGCTACGAACTTGCCAGATGTTCAAGATTCCATAAACACTTTGAAATCAAAATTCAGAGAGAAAGGGCTTTCAGATCAGGATCTTGTACTTCTTAGTGCGGGTATTTATCATAATCTCTACAACTTAATAAATAAACAATATCTTGCTTTTAAAAAAAAAACACTATCGTGCTTACTCAAATTTGAATTTCGTTAAAGGTGCACATACTATCGGTACAACAGCTTGCTTCTTTGTCATACCACGTTTAGATGCTCAAGATCCTACGATAAATCCAGAATTCTTTCAAATCATGAGATCAAAATGTCCCCAAGGAGGCGATGTTAATGTCAGGATTCCGTTGGATTGGGATAGCCAGTTTGTGTTTGATGACCAAATCTTGCGAAACATCAAAAATGGCAGAGGTGTCATTCTATCGGACTCTGTCTTGTACCAAGACAATAATATGAAGAAAATCATTGATTCGTACCTAGATACTAATCAAAGTTCAAATGCTAATTTTGCTGCGGATTTTGCTAAAGCCATGGTAAAGATGGGTGCTATTGGAGTGAAGATCGGTGTTGAAGGAGAGATTAGACGTTTATGCAATGCTACAAACTAG

Parameters

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E-value:

Short sequence: