Phylogenetic Study

This Pipeline runs PhyML and GECA in order to generate a phylogenetic tree with gene structure information that will be visualized by Archaeopteryx .

Launch Pipeline

Start by selecting the sequences of interest from a Multicriteria search.

The selected sequences will be aligned with MAFFT in order to generate the phylogenetic tree with PhyML . In parallel, the detection of introns will be done thanks to CIWOG followed by GECA that will generate the gene structures.

Finally, these results will be combined together and visualized with Archaeopteryx .

Limitations

This pipeline is limitted to a 100 sequences.