Phylogenetic Study
Launch Pipeline
Start by selecting the sequences of interest from a Multicriteria search.
The selected sequences will be aligned with MAFFT in order to generate the phylogenetic tree with PhyML
.
In parallel, the detection of introns will be done thanks to CIWOG followed by
GECA that will generate the gene structures.
Finally, these results will be combined together and visualized with Archaeopteryx .
Limitations
This pipeline is limitted to a 100 sequences.
This Pipeline runs PhyML and
GECA in order to generate a phylogenetic
tree with gene structure information that will be visualized by Archaeopteryx .
Launch Pipeline
Start by selecting the sequences of interest from a Multicriteria search.
The selected sequences will be aligned with MAFFT in order to generate the phylogenetic tree with PhyML
.
In parallel, the detection of introns will be done thanks to CIWOG followed by
GECA that will generate the gene structures.
Finally, these results will be combined together and visualized with Archaeopteryx
.
Limitations
This pipeline is limitted to a 100 sequences.
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Input Sequences are extracted from the Redoxibase from a Mutricriteria search |
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Visualization Archaeopteryx Mode: Applet. Output: XML. |