Phylogenetic Study
This Pipeline runs
PhyML 
and
GECA in order to generate a phylogenetic
tree with gene structure information that will be visualized by
Archaeopteryx 
.
Start by selecting the sequences of interest from a
Multicriteria search.
The selected sequences will be aligned with MAFFT in order to generate the phylogenetic tree with
PhyML 
.
In parallel, the detection of introns will be done thanks to
CIWOG followed by
GECA that will generate the gene structures.
Finally, these results will be combined together and visualized with
Archaeopteryx 
.
Limitations
This pipeline is limitted to a
100 sequences.