The peroxidases and oxidases database

Plant databases
Plant Genome DataBase (genome and EST database)
Phytozome (comparative genomic)
Plaza (comparative genomic)

Basal Angiosperms
Ancestral Angiosperm Genome Project
Amborella Genome Database
1KP-Plants
Sugi Genome Database
Brassica
TAIR, The Arabidopsis Information Resource
Brassica Database
Brassica Genome Gateway @ BBSRC
Brassica oleracea Datbase
Brassica @ PGG Bioinformatics
Vicogenta
Legumes
MENS, Medicago EST Navigation System
Medicago truncatula Genome Database
Medicago truncatula Gene Expression Atlas (MtGEA) Project
Medicago truncatula Hapmap Project
Lotus japonicus Genome Sequencing Project

Cereals
CeralsDB
CR-EST: The IPK Crop EST Database
MaizeGDB, Maize Genetics and Genomics Database
RGP, Rice Genome Research Program
GRAMENE
Other
Solanaceae Genomic Network.
Heliagene (Helianthus annuus genome project).
Medicinal Plants (Medicinal Plant Genomics Resource).
Sunflower genome Database.


Tools for gene prediction
GENSCAN
GeneMark
GenomeScan
GeneID
HMMgene
AUGUSTUS
EuGène
Sofberry (gene finding)
Sofberry(gene finding with similarity)

Tools for gene expression
PLEXdb (Plant Expression Database)
ExpressWeb (Expression db Website)


Tools for promoter analysis
PLACE (Plant Cis-acting Regulatory DNA Elements)
PlantCARE (Cis-Acting Regulatory Element)
PlantPAN 3.0 (Plant Promoter Analysis Navigator)
Promoter 2.0 Prediction Server
Softberry (Recognition of PLANT Regulatory motifs conserved )
EP3 (Easy Promoter Prediction Program)
GRASSIUS (grasses regulatory information)
NSITE (Recognition of Regulatory motifs)
PATTERN (pattern search);
Signal Scan
TSSP (Prediction of PLANT Promoters)

Tools for alignment and phylogeny
Phylogeny.fr
ClustalW
ClustalO

General databases
UniProt Knowledgebase (Swiss-Prot + TrEMBL)
TGI, The Gene Index Project (EST database + compilation)
GeneDB !! (genome database)
NCBI (genome and EST database)
JGI (genome and EST database)
SUPERFAMILY (genome database)

Unicellular algae
AlgaeBase
Protist databases
TBestDB, Taxonomically Broad EST Database (Protist EST Program)

Prokaryote databases
CyanoBase (Cyanobacteria genome database)
J. Craig Venter Institute (genome database)