Common Introns Within Orthologous Genes (2009 Wilkerson MD & al. CIWOG) seeks commons introns in groups of orthologous genes or families of paralogous genes. Common introns are detected from their position and sequence conservation in the corresponding protein alignments.

Documentation Go to Documentation.


CIWOG from Blast needs 3 types of inputs:
  • a Gene structure file.
  • a genomic sequence in FASTA format.
  • a protein sequence in FASTA format.

This procedure can also be lauched following the results of a Ciwog from Search.

Ciwog from Blast

[example: complement(join(exon_1_start..exon_1_stop,exon_2_start..exon_2_stop))]
Sequences longer than 5'000 aa/nt will be truncated!

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