Submit Blast Ciwog

CIWOG from BLAST

Common Introns Within Orthologous Genes (2009 Wilkerson MD & al. CIWOG) seeks commons introns in groups of orthologous genes or families of paralogous genes. Common introns are detected from their position and sequence conservation in the corresponding protein alignments.

Documentation
Go to Documentation.
INPUT
CIWOG from Blast needs 3 types of inputs:

a Gene structure file.
a genomic sequence in FASTA format.
a protein sequence in FASTA format.

This procedure can also be lauched following the results of a Ciwog from Search.

Ciwog from Blast

GenBank-style gene structure :

[example: complement(join(exon_1_start..exon_1_stop,exon_2_start..exon_2_stop))]

Paste your protein sequence here (fasta or raw sequence):

Paste your genomic sequence here (fasta or raw sequence):

Sequences longer than 5'000 aa/nt will be truncated!

Parameters

Show the best:

matches, ordered by:

E-value:

Short sequence:

For more Information, please visite the Documentation.
For Questions, please write to : Peroxibase@lrsv.ups-tlse.fr